Ferredoxin 3D structures

3D structures of ferredoxin

Updated on 28-February-2023

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• 2Fe-2S containing ferredoxins
  • 6yac, 6yez – Fd in PSI-Fd complex – pea – Cryo EM
    
  • 2kaj, 1dox, 1doy – SyFd +Ga – Synechocystis – NMR
    
  • 3hui, 4ltu – Fd – Rhodopseudomonas palustris
    
  • 1off – SyFd
    
  • 3gce – Fd – Nocardioides aromaticivorans
    
  • 3lxf – Fd – Novosphingobium aromaticivorans
    
  • 2e4p, 2e4q - Fd – Pseudomonas sp.
    
  • 2q3w, 1vm9 - PmFd (mutant) – Pseudomonas mendocina
    
  • 2i7f, 1uwm - RcFd – Rhodobacter capsulatus
    
  • 1e9m – RcFd - NMR
    
  • 1rfk, 3p63 - Fd – Cyanobacterium masticogladus laminosus
    
  • 1vck - Fd – Pseudomonas resinovorans
    
  • 1wri, 1frr - Fd – Equisetum arvense
    
  • 1sjg - PmFd– NMR
    
  • 1iue - Fd– Plasmodium falciparum
    
  • 1m2a – AeFd – Aquifex aeolicus
    
  • 1m2b, 1m2d, 1f37, 1f5b, 1f5c – AeFd (mutant)
    
  • 1l5p – Fd – Trichomonas vaginalis
    
  • 1i7h - Fd – Escherichia coli
    
  • 1czp, 1qt9, 1frd, 1fxa - aFd– anabaena
    
  • 1j7a, 1j7b, 1j7c , 1qoa, 1qob, 1qof, 1qog- aFd (mutant)
    
  • 1e0z – Fd – Halobacterium salinarium
    
  • 1e10 - Fd – Halobacterium halobium
    
  • 1pfd – Fd – Petroselinum crispum – NMR
    
  • 1a70 - Fd (mutant) – Spinacia oleracea
    
  • 1awd - Fd – Chlorella fusca
    
  • 2cjn, 2cjo, 1roe – SyFd – NMR
    
  • 1rof, 5aui, 5auk, 6iri, 6jo2 – SyFd – Synechococcus elongatus
    
  • 1doi - Fd – Haloarcula marismortui
    
  • 4fxc – Fd – Spirulina platensis
    
  • 1fxi, 3av8 – Fd – Aphanothece sacrum
    
  • 3dqy, 2qpz, 3ah7 - PpFd – Pseudomonas putida
    
  • 3ab5, 3wcq – Fd – Cyanidioschyzon merolae
    
  • 3b2f, 5h57 – mFd – maize
    
  • 3w5u, 3w5v, 1gaq, 5h5j – mFd + ferredoxin-NADP reductase
    
  • 5h92, 5h8y – mFd + sulfite reductase
    
  • 3b2g – Fd – Leptolyngbya boryana
    
  • 1ewy – Fd + ferredoxin-NADP reductase - Nostoc
    
  • 5ffi, 5abr - AvFd – Azotobacter vinelandii
    
  • 5bok - Fd – Diaphorobacter
    
  • 4zhp - Fd – potato
    
  • 4zho – AtFd-2 – Arabidopsis thaliana
    
  • 6b03, 6b05, 6brs – AtFd-2 + zinc protease
    
  • 6e6s, 6e6r, 6e6q – PaFd (mutant)_- Pseudomonas aeruginosa
    
  • 2mh7, 6kum, 6kv0, 6lk1 – CrFd – Chlamydomonas reinhardtii
    
  • 7wzn – CrFd in photosystem I – Cryo EM
    
    
  • 6vjv – Fd – Prochlorococcus phage
    
• 4Fe-4S containing ferredoxins
  • 3eun – AvFd – Allochromatium vinosum
    
  • 3exy - AvFd (mutant)
    
  • 2vkr - Fd+Zn – Acidianus ambivalens
    
  • 2z8q - PfFd (mutant) – Pyrococcus furiosus
    
  • 1siz - PfFd
    
  • 3pni - PfFd (mutant)
    
  • 2fgo - PaFd
    
  • 1iqz, 1ir0 - BtFd – Bacillus thermoproteolyticus
    
  • 1rgv - Fd – Thauera aromatica
    
  • 1dax, 1dfd – DaFd – Desulfovibrio africanus – NMR
    
  • 1fxr - DaFd
    
  • 1vjw – Fd – Thermotoga maritima
    
  • 1dwl – Fd – Desulfomicrobium norvegicum
    
  • 7m1n – Fd – Hydrogenobacter thermophilus
    
• 3Fe-4S containing ferredoxins
  • 2v2k – Fd – Mycobacterium smegmatis
    
  • 1wtf - BtFd (mutant)
    
  • 1sj1 - PfFd
    
  • 1fxd - DgFd – Desulfovibrio gigas
    
  • 1f2g – DgFd – NMR
    
  • 1xer - Fd – Sulfolobus tokodaii
    
• 4Fe-4S+2Fe-2S containing ferredoxins
  • 6khi , 6l7o– SyFd in photosynthetic NADPH dehydrogenase complex – Cryo EM
    
• 4Fe-4S+3Fe-4S containing ferredoxins
  • 1gao, 6fdr, 7fd1, 7fdr, 1axq, 6fd1, 1frh, 1fri,1frj, 1frk, 1frl, 1frm, 1fda, 1fdb, 1fdd, 5fd1, 1fer – AvFd – Azotobacter vinelandii
    
  • 1pc4, 1pc5, 1g6b, 1g3o, 1ff2, 1b0v, 1d3w, 1b0t, 1a6l, 1ftc, 1frx, 2fd2, 1fd2 - AvFd (mutant)
    
  • 1h98 – Fd – Thermus thermophilus
    
  • 1a8p, 1bd6, 1bc6 - BsFd – Bacillus schlegelii – NMR
    
• 4Fe-4S+4Fe-4S containing ferredoxins
  • 1dur – Fd – Peptoniphilus asaccarolyticus
    
  • 1bwe, 1bqx - BsFd (mutant) – NMR
    
  • 2fdn, 1fca , 1fdn - Fd – Clostridium acidi-urici
    
  • 1blu - Fd – Chromatium vinosum
    
  • 1clf – Fd – Clostridium pasteurianum – NMR
    
• Adrenodoxin
  • 3p1m - hADR - human
    
  • 7m8i – hADR/Cyp11B2 + fadrozole
    
  • 3na0, 3n9y, 3n9z, 3na1 - hADR +cholesterol side-chain cleavage enzyme
    
  • 1cje, 1ayf - bADR - bovine
    
  • 2bt6 – bADR1 modified
    
  • 1l6u, 1l6v – bADR1 – NMR
    
  • 1e6e – bADR (mutant)+ADR reductase
    
  • 2mjd, 2mje – yADR – yeast
    
  • 2jqr – yADR Fd domain (mutant)+cytochrome c (mutant) – NMR
    
  • 5uj5 – ADR – Encephalitozoon cuniculi
    
• Putidaredoxin
  • 1yji, 1yjj, 1pdx – PpPUT – NMR
    
  • 3lb8 – PpPUT (mutant)+PUT reductase
    
  • 1xln, 1xlo, 1xlp, 1xlq, 1r7s, 1oqq, 1oqr - PpPUT (mutant)
    
  • 1gpx, 1put- PpPUT (mutant) - NMR
    
  • 4jws, 5gxg - PpPUT + cytochrome P450cam
    
  • 3w9c, 4jwu, 6nbl - PpPUT (mutant) + cytochrome P450cam
    
  • 2m56 - PpPUT (mutant) + cytochrome P450cam - NMR
    
  • 4jx1 - PpPUT (mutant) + cytochrome P450cam + camphor + hydroxycamphor
    
• Terpredoxin
  • 1b9r – TER – Pseudomonas - NMR
    

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Michal Harel