8c5j | pdb_00008c5j

Spatial structure of Lch-alpha peptide from two-component lantibiotic system Lichenicidin VK21

spinqualitylabelsall models 8c5j Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8c5j is a 1 chain structure with sequence from Bacillus licheniformis. This structure supersedes the now removed PDB entry 2ktn. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: 2KT, ABA, DAL, DBU, DHA Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function LANLA_BACLI Publication Abstract from PubMed To date, a number of lantibiotics have been shown to use lipid II-a highly conserved peptidoglycan precursor in the cytoplasmic membrane of bacteria-as their molecular target. The alpha-component (Lchalpha) of the two-component lantibiotic lichenicidin, previously isolated from the Bacillus licheniformis VK21 strain, seems to contain two putative lipid II binding sites in its N-terminal and C-terminal domains. Using NMR spectroscopy in DPC micelles, we obtained convincing evidence that the C-terminal mersacidin-like site is involved in the interaction with lipid II. These data were confirmed by the MD simulations. The contact area of lipid II includes pyrophosphate and disaccharide residues along with the first isoprene units of bactoprenol. MD also showed the potential for the formation of a stable N-terminal nisin-like complex; however, the conditions necessary for its implementation in vitro remain unknown. Overall, our results clarify the picture of two component lantibiotics mechanism of antimicrobial action. Specific Binding of the alpha-Component of the Lantibiotic Lichenicidin to the Peptidoglycan Precursor Lipid II Predetermines Its Antimicrobial Activity.,Panina IS, Balandin SV, Tsarev AV, Chugunov AO, Tagaev AA, Finkina EI, Antoshina DV, Sheremeteva EV, Paramonov AS, Rickmeyer J, Bierbaum G, Efremov RG, Shenkarev ZO, Ovchinnikova TV Int J Mol Sci. 2023 Jan 10;24(2):1332. doi: 10.3390/ijms24021332. PMID:36674846 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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