8dna | pdb_00008dna

Acidipropionibacterium acidipropionici encapsulin in a closed state at pH 3.0

spinqualitylabelsall models 8dna, resolution 2.77Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8dna is a 1 chain structure with sequence from Acidipropionibacterium acidipropionici ATCC 4875. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function K7RV67_ACIA4 Publication Abstract from PubMed Encapsulins are microbial protein nanocages capable of efficient self-assembly and cargo enzyme encapsulation. Due to their favorable properties, including high thermostability, protease resistance, and robust heterologous expression, encapsulins have become popular bioengineering tools for applications in medicine, catalysis, and nanotechnology. Resistance against physicochemical extremes like high temperature and low pH is a highly desirable feature for many biotechnological applications. However, no systematic search for acid-stable encapsulins has been carried out, while the influence of pH on encapsulin shells has so far not been thoroughly explored. Here, we report on a newly identified encapsulin nanocage from the acid-tolerant bacterium Acidipropionibacterium acidipropionici. Using transmission electron microscopy, dynamic light scattering, and proteolytic assays, we demonstrate its extreme acid tolerance and resilience against proteases. We structurally characterize the novel nanocage using cryo-electron microscopy, revealing a dynamic five-fold pore that displays distinct "closed" and "open" states at neutral pH but only a singular "closed" state under strongly acidic conditions. Further, the "open" state exhibits the largest pore in an encapsulin shell reported to date. Non-native protein encapsulation capabilities are demonstrated, and the influence of external pH on internalized cargo is explored. Our results expand the biotechnological application range of encapsulin nanocages toward potential uses under strongly acidic conditions and highlight pH-responsive encapsulin pore dynamics. Exploring the Extreme Acid Tolerance of a Dynamic Protein Nanocage.,Jones JA, Andreas MP, Giessen TW Biomacromolecules. 2023 Mar 13;24(3):1388-1399. doi: 10.1021/acs.biomac.2c01424. , Epub 2023 Feb 16. PMID:36796007 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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