4v7d | pdb_00004v7d

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Loading... Status: waiting for Mol* initialization Structural highlights 4v7d is a 11 chain structure with sequence from Escherichia coli and Escherichia coli K-12. This structure supersedes the now removed PDB entries 3j5w and 3j5x. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: 5OH, DPP, KBE, UAL, ZN Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function RL35_ECOLI Publication Abstract from PubMed During protein synthesis, tRNAs and their associated mRNA codons move sequentially on the ribosome from the A (aminoacyl) site to the P (peptidyl) site to the E (exit) site in a process catalyzed by a universally conserved ribosome-dependent GTPase [elongation factor G (EF-G) in prokaryotes and elongation factor 2 (EF-2) in eukaryotes]. Although the high-resolution structure of EF-G bound to the posttranslocation ribosome has been determined, the pretranslocation conformation of the ribosome bound with EF-G and A-site tRNA has evaded visualization owing to the transient nature of this state. Here we use electron cryomicroscopy to determine the structure of the 70S ribosome with EF-G, which is trapped in the pretranslocation state using antibiotic viomycin. Comparison with the posttranslocation ribosome shows that the small subunit of the pretranslocation ribosome is rotated by approximately 12 degrees relative to the large subunit. Domain IV of EF-G is positioned in the cleft between the body and head of the small subunit outwardly of the A site and contacts the A-site tRNA. Our findings suggest a model in which domain IV of EF-G promotes the translocation of tRNA from the A to the P site as the small ribosome subunit spontaneously rotates back from the hybrid, rotated state into the nonrotated posttranslocation state. Structure of the ribosome with elongation factor G trapped in the pretranslocation state.,Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N Proc Natl Acad Sci U S A. 2013 Dec 9. PMID:24324137 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Elongation factor 3D structures Transfer RNA (tRNA)

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