4whb | pdb_00004whb
Crystal structure of phenylurea hydrolase B
Structural highlights
FunctionPublication Abstract from PubMedThe amidohydrolase superfamily (AHS) has remarkable functional diversity, with considerable structural and functional annotation of known sequences. In microbes, the recent evolution of several members of this family to catalyse the breakdown of environmental xenobiotics is not well understood. An evolutionary transition from binuclear to mononuclear metal ion coordination at the active sites of these enzymes could produce large functional changes, such as those observed in nature, but there are few clear examples available to support this hypothesis. To investigate the role of binuclear-mononuclear active site transitions in the evolution of new function in this superfamily, we have characterized two recently evolved enzymes that catalyze the hydrolysis of the synthetic herbicides molinate (MolA) and phenylurea (PuhB). In this work the crystal structures, mutagenesis, metal-ion analysis and enzyme kinetics of both MolA and PuhB establish that these enzymes utilize a mononuclear active site. However, bioinformatics and structural comparisons reveal that the closest putative ancestor of these enzymes had a binuclear active site, indicating a binuclear-mononuclear transition has occurred. These proteins may represent examples of evolution modifying the characteristics of existing catalysts to satisfy new requirements; specifically, metal ion rearrangement leading to large leaps in activity that would not otherwise be possible. Evolutionary expansion of the amidohydrolase superfamily in bacteria in response to synthetic compounds: the molinate and diuron hydrolases.,Sugrue E, Fraser NJ, Hopkins DH, Carr PD, Khurana JL, Oakeshott JG, Scott C, Jackson CJ Appl Environ Microbiol. 2015 Jan 30. pii: AEM.04016-14. PMID:25636851[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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