5o6f | pdb_00005o6f

NMR structure of cold shock protein A from Corynebacterium pseudotuberculosis

spinqualitylabelsall models 5o6f Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5o6f is a 1 chain structure with sequence from Corynebacterium pseudotuberculosis. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance. Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function D9QDZ8_CORP2 Publication Abstract from PubMed Cold shock proteins (Csps) function to preserve cell viability at low temperatures by binding to nucleic acids and consequently control gene expression. The mesophilic bacterium Corynebacterium pseudotuberculosis is the causative agent of caseous lymphadenitis in animals, and infection to livestock is a considerable economic burden worldwide. In this report, the structure of cold shock protein A from C. pseudotuberculosis (Cp-CspA) and biochemical analysis of its temperature-dependent interaction with a Y-box single-stranded DNA (ssDNA) motif is presented. The Cp-CspA structure contains five beta-strands making up a beta-barrel fold with 11 hydrophobic core residues and two salt bridges that confers it with a melting temperature of ~54 degrees C that is similar to mesophilic Bs-CspB. Chemical shift perturbations analysis revealed that residues in the nucleic acid binding motifs (RNP 1 and 2) and loop 3 are involved in binding to the Y-box fragment either by direct interaction or by conformational rearrangements remote from the binding region. Fluorescence quenching experiments of Cp-CspA showed that the dissociation constants for Y-box ssDNA binding is nanomolar and the binding affinity decreased as the temperature increased, indicating that the interaction is enthalpically driven and the hydrogen bonds and van der Waals forces are important contributions for complex stabilization. The Y31 of Cp-CspA is a particular occurrence among Csps from mesophilic bacteria that provide a possible explanation for the higher binding affinity to ssDNA than that observed for Bs-CspB. Anisotropy measurements indicated that the reduction in molecular mobility of Cp-CspA upon Y-box binding is characterized by a cooperative process. This article is protected by copyright. All rights reserved. Structure and interaction of Corynebacterium pseudotuberculosis cold shock protein A with Y-box single-stranded DNA fragment.,Caruso IP, Panwalkar V, Coronado MA, Dingley AJ, Cornelio ML, Willbold D, Arni RK, Eberle RJ FEBS J. 2017 Dec 2. doi: 10.1111/febs.14350. PMID:29197185 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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