5cx8 | pdb_00005cx8

Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.

spinqualitylabelsall models 5cx8, resolution 2.40Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5cx8 is a 2 chain structure with sequence from Porphyromonas gingivalis W83. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: 3DO, ACT, GOL, MSE, RP3, TG6 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function F5H948_PORGI Publication Abstract from PubMed Porphyromonas gingivalis is the main causing agent of periodontitis. It deregulates the inflammatory and innate host immune responses through virulence factors, which include the immunodominant outer-membrane surface receptor antigens A (PgRagA) and B (PgRagB), co-transcribed from the rag pathogenicity island. The former is predicted to be a Ton-dependent porin-type translocator but the targets of this translocation and the molecular function of PgRagB are unknown. Phenomenologically, PgRagB has been linked with epithelial cell invasion and virulence according to murine models. It also acts as a Toll-like receptor agonist and promotes multiple mediators of inflammation. Hence, PgRagB is a candidate for the development of a periodontitis vaccine, which would be facilitated by the knowledge of its atomic structure. Here, we crystallized and solved the structure of 54-kDa PgRagB, which revealed a single domain centered on a curved helical scaffold. It consists of four tetratrico peptide repeats (TPR1-4), each arranged as two helices connected by a linker, plus two extra downstream capping helices. The concave surface bears four large intertwined irregular inserts (A-D), which contribute to an overall compact moiety. Overall, PgRagB shows substantial structural similarity with Bacteroides thetaiotaomicron SusD and Tannerella forsythia NanU, which are, respectively, engaged in binding and uptake of maltooligosaccharide/starch and sialic acid. This suggests a similar sugar-binding function for PgRagB for uptake by the cognate PgRagA translocator, and, consistently, three potential monosaccharide-binding sites were tentatively assigned on the molecular surface. This article is protected by copyright. All rights reserved. Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis.,Goulas T, Ferrer IG, Hutcherson JA, Potempa BA, Potempa J, Scott DA, Gomis-Ruth FX Mol Oral Microbiol. 2015 Oct 6. doi: 10.1111/omi.12140. PMID:26441291 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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