8gkh | pdb_00008gkh

Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA

spinqualitylabelsall models 8gkh, resolution 2.70Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8gkh is a 4 chain structure with sequence from Methanosarcina mazei, Spizellomyces punctatus and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: Electron Microscopy, Resolution 2.7Å Ligands: MG, ZN Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function A0A0F8NYV9_METMZ A0A0L0H5U9_SPIPD Publication Abstract from PubMed RNA-guided systems, which employ complementarity between a guide RNA and target nucleic acid sequences for recognition of genetic elements, play a central role in biological processes in both prokaryotes and eukaryotes. For example, the prokaryotic CRISPR-Cas systems provide adaptive immunity for bacteria and archaea against foreign genetic elements. Cas effectors, like Cas9 and Cas12, perform guide RNA-dependent DNA cleavage(1). Although a few eukaryotic RNA-guided systems have been studied so far, such as RNA interference(2) and ribosomal RNA modification(3), it remains unclear whether eukaryotes have RNA-guided endonucleases. Recently, a new class of prokaryotic RNA-guided system (termed OMEGA) was reported(4,5). The OMEGA effector TnpB is the putative ancestor of Cas12 and has RNA-guided endonuclease activity(4,6). TnpB may also be the ancestor of the eukaryotic transposon-encoded Fanzor (Fz) proteins(4,7), raising the possibility that eukaryotes are also equipped with CRISPR-Cas/OMEGA-like programmable RNA-guided endonucleases. Here we report the biochemical characterization of Fz, showing that it is an RNA-guided DNA endonuclease. We also show that Fz can be reprogrammed for human genome engineering applications. Finally, we resolved the structure of Spizellomyces punctatus Fz (SpuFz) at 2.7A using cryogenic-electron microscopy, revealing the conservation of the core regions among Fz, TnpB and Cas12, despite diverse cognate RNA structures. Our results show that Fz is a eukaryotic OMEGA system, demonstrating that RNA-guided endonucleases are present in all three domains of life. Fanzor is a eukaryotic programmable RNA-guided endonuclease.,Saito M, Xu P, Faure G, Maguire S, Kannan S, Altae-Tran H, Vo S, Desimone A, Macrae RK, Zhang F Nature. 2023 Jun 28. doi: 10.1038/s41586-023-06356-2. PMID:37380027 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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