5f5w | pdb_00005f5w

Crystal structure of the alpha subunit of glycyl tRNA synthetase (GlyRS) from Aquifex aeolicus in complex with an analog of glycyl adenylate (Gly-SA)

spinqualitylabelsall models 5f5w, resolution 2.81Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5f5w is a 5 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.81Å Ligands: G5A Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function SYGA_AQUAE Publication Abstract from PubMed Glycyl tRNA synthetase (GlyRS) provides a unique case among class II aminoacyl tRNA synthetases (aaRSs), with two clearly widespread types of enzymes: a dimeric (a2) species present in some bacteria, archaea, and eukaryotes, and a heterotetrameric form (a2b2) present in most bacteria. Although the differences between both types of GlyRS at the anticodon binding domain level are evident, the extent and implications of the variations in the catalytic domain have not been described and it is unclear whether the mechanism of amino acid recognition is also dissimilar. Here we show that the a-subunit of the a2b2 GlyRS from the bacterium Aquifex aeolicus is able to perform the first step of the aminoacylation reaction, which involves the activation of the amino acid with ATP. The crystal structure of the a-subunit in the complex with an analog of glycyl adenylate at 2.8 A resolution presents a conformational arrangement that properly positions the cognate amino acid. This work shows that glycine is recognized by a subset of different residues in the two types of GlyRS. A structural and sequence analysis of class II catalytic domains shows that bacterial GlyRS is closely related to AlaRS, which led us to define a new subclassification of these ancient enzymes and to propose an evolutionary path of a2b2 GlyRS, convergent with a2 GlyRS and divergent from AlaRS, thus providing a possible explanation for the puzzling existence of two proteins sharing the same fold and function, but not a common ancestor. Structural Insights into the Polyphyletic Origins of Glycyl tRNA Synthetases.,Valencia-Sanchez MI, Rodriguez-Hernandez A, Ferreira R, Santamaria-Suarez HA, Arciniega M, Dock-Bregeon AC, Moras D, Beinsteiner B, Mertens H, Svergun D, Brieba de Castro L, Grotli M, Torres-Larios A J Biol Chem. 2016 May 23. pii: jbc.M116.730382. PMID:27226617 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Aminoacyl tRNA synthetase 3D structures

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