Porin

spinqualitylabelsall models E. coli OmpC is a trimeric transmembrane protein with a porin fold (PDB code 2j1n) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Function Porin or Outer Membrane Proteins (Omps) act as channels which allow passive diffusion of sugars, ions and amino acids. They are beta barrel proteins which traverse the cell membrane. In E. coli they are named according to their genes: C, F, G, etc. (OmpC, OmpF, OmpG). Voltage-Dependent Anion Channel (VDAC) are ion channel Omps found in outer mitochondrial membrane. In Pseudomonas aeruginosa the porin gene products are named OprD, OprE, OprK, OprP, etc. and OpdC, OpdH, etc. Maltoporin (LamB) facilitates the diffusion of maltodextrin across the membrane. Chitoporin (Chitp) facilitates the diffusion of chitooligosaccharides across the outer membrane of some bacteria. See more details in Mycobacterium tuberculosis ArfA Rv0899 for OmpA type Osmoporin OmpC (E. coli) OmpF Molecular Playground/OmpG Molecular Playground/OmpG2 Osmoporin OmpK36 (K. pneumoniae) Structure One representative porin structure is the crystal structure osmoporin OmpC from Escherichia coli (2j1n). OmpC has three beta-barrels associated to form a tight trimer . Porin is a transmembrane protein, as can be seen from the around the protein, this makes it possible to submerge in the lipid bilayer (hydrophobic amino acids are sandybrown, hydrophilic ones are cyan). As you can see the channel in the protein is made of mainly hydrophilic chains thus making it possible for the sugar to pass through (these scenes were created by Nádori Gergely). The channels have wide openings on either side with a tighter bottleneck in the middle, as illustrated in the interactive view visualizing channels with pseudoatoms. In an alternative visualization, channels are shown as surfaces, slabbed on both sides of the bottleneck for better visibility. Finally, the animation below shows a view perpendicular to the membrane, slicing through different layers of the porin structure with the solvent accessible surface shown in tan. 3D structures of Porin Porin 3D structures

Acknowledgement

The scene showing channels as pseudoatoms is from a page (User:Eric_Martz/Sandbox_19) made by Eric Martz.

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Alexander Berchansky, Karsten Theis, Joel L. Sussman, Michal Harel, Jaime Prilusky