4nsy | pdb_00004nsy

Wild-type lysobacter enzymogenes lysc endoproteinase covalently inhibited by TLCK

spinqualitylabelsall models 4nsy, resolution 1.10Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4nsy is a 2 chain structure with sequence from Lysobacter enzymogenes. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.1Å Ligands: 2OY, CA, CL Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function LYSC_LYSEN Highly specific endopeptidase that hydrolyzes lysyl bonds including the Lys-Pro bond. Publication Abstract from PubMed Lysobacter enzymogenes lysyl endoproteinase (LysC) is a trypsin-type serine protease with a high pH optimum that hydrolyses all Lys-Xaa peptide bonds. The high specificity of LysC renders it useful for biotechnological purposes. The K30R variant of a related lysyl endoproteinase from Achromobacter lyticus has favourable enzymatic properties that might be transferrable to LysC. To visualize structural differences in the substrate-binding sites, the crystal structures of wild-type and the K30R variant of LysC were determined. The mutation is located at a distance of 12 A from the catalytic triad and subtly changes the surface properties of the substrate-binding site. The high pH optimum of LysC can be attributed to electrostatic effects of an aromatic Tyr/His stack on the catalytic aspartate and is a general feature of this enzyme subfamily. LysC crystals in complex with the covalent inhibitor N(alpha)-p-tosyl-lysyl chloromethylketone yielded data to 1.1 and 0.9 A resolution, resulting in unprecedented precision of the active and substrate-binding sites for this enzyme subfamily. Error estimates on bond lengths and difference electron density indicate that instead of the expected oxyanion a hydroxyl group binds to the partially solvent-exposed oxyanion hole. Protonation of the alkoxide catalytic intermediate might be a recurring feature during serine protease catalysis. Atomic resolution structure of a lysine-specific endoproteinase from Lysobacter enzymogenes suggests a hydroxyl group bound to the oxyanion hole.,Asztalos P, Muller A, Holke W, Sobek H, Rudolph MG Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1832-43. doi:, 10.1107/S1399004714008463. Epub 2014 Jun 29. PMID:25004961 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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