5me1 | pdb_00005me1

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Loading... Status: waiting for Mol* initialization Structural highlights 5me1 is a 10 chain structure with sequence from Escherichia coli K-12 and Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: Electron Microscopy, Resolution 13.5Å Ligands: 2MG, 4OC, 4SU, 5MC, 5MU, D2T, FME, G7M, H2U, MA6, PSU, UR3 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function RS6_ECOLI Binds together with S18 to 16S ribosomal RNA.[HAMAP-Rule:MF_00360] Publication Abstract from PubMed In bacteria, the start site and the reading frame of the messenger RNA are selected by the small ribosomal subunit (30S) when the start codon, typically an AUG, is decoded in the P-site by the initiator tRNA in a process guided and controlled by three initiation factors. This process can be efficiently inhibited by GE81112, a natural tetrapeptide antibiotic that is highly specific toward bacteria. Here GE81112 was used to stabilize the 30S pre-initiation complex and obtain its structure by cryo-electron microscopy. The results obtained reveal the occurrence of changes in both the ribosome conformation and initiator tRNA position that may play a critical role in controlling translational fidelity. Furthermore, the structure highlights similarities with the early steps of initiation in eukaryotes suggesting that shared structural features guide initiation in all kingdoms of life. Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways.,Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR Nucleic Acids Res. 2016 Dec 15. pii: gkw1251. PMID:27986852 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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