Serotonin Transporter

spinqualitylabelsall models Structure of the SERT Homologue LeuT, (2q6h) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Introduction Serotonin Transporters (SERTs) are integral membrane proteins that transport serotonin from synaptic spaces into presynaptic neurons. Serotonin is an important neurotransmitter which impacts a mammal’s perception of resource availability, regulates mood, and some cognitive functions like memory and learning. It is also converted into melatonin by Serotonin N-acetyltransferase to regulate sleep cycles. SERTs function by reuptaking serotonin in the synaptic cleft, effectively terminating the function of serotonin and halting neuronal transmission. Serotonin reuptake is a critical process to prevent overstimulation of nerves. Inappropriately low levels of serotonin, either due to reduced production or overly active SERTs, can cause a number of psychiatric disorders. SERTs Involvement in OCD and Autism       The gene that encodes the SERTs is SLC6A4. The promoter region of SLC6A4 has two well-known polymorphisms aptly named “short” and “long” corresponding to the number of repeats in the 5-HTT-linked polymorphic region (HTTLPR). The short variation of this promoter leads to less transcription of the SERT gene SLC6A4. Further, studies have found that the short allele of HTTLPR is associated with changes in the brain structure such as reduced grey matter in the perigeniculate region surrounding Cg25 and in the amygdala, areas important for emotional processing and mood regulation. Massive genetic analysis of autistic patients reveals that the S allele is present significantly more in patients with Autism than without. Since the presence of the short-HTTLPR promoter results in fewer SERTs being produced, and SERTs function by reuptaking and thus limiting serotonin-induced signal transduction, it is not unexpected that over 30% of autistic individuals, who more commonly have the short-HTTLPR allele, have elevated concentrations of serotonin. These elevated concentrations of serotonin also explain why pharmaceutical therapeutics like selective serotonin reuptake inhibitors (SSRIs), including the well-known Zoloft and Prozac, have been shown to alleviate some symptoms of autism. The same is true for the well-known Obsessive-Compulsive disorder (OCD), patients of which suffer from intrusive mental tics resulting in repetitive rituals such as washing their hands obsessively often. Although OCD is believed to be caused by aberrant functioning of glutamate responsive synapses, treatment with serotonin reuptake inhibitors helps treat symptoms of OCD possibly because serotonin modulates glutamate action, as validated by mouse models. Structure of SERTs       SERTs are members of the sodium-coupled transporter family. These proteins harness the pre-existing sodium gradients to catalyze the uptake of serotonin. Unfortunately, no high-resolution structure of a SERT has been solved. Instead a prokaryotic homolog of SERT, i.e. LeuT has been solved. LeuT shares significant sequence homology, especially for areas of the protein critical for function. The overall structure of SERT is dominated by alpha helices. Serotonin passes through a central cavity upon reuptake. Sodium ions stabilize the serotonin bound structure before releasing serotonin within the presynaptic neuron. Pharmaceutical Implications       Tricyclic antidepressants (TCAs) were among the first antidepressants ever developed. Discovered in the 1950s, they are named after their unique structure which contains three rings. One of the best known TCAs, clomipramine, developed by Novartis, inhibits SERTs with remarkable efficacy. Clomipramine binds at the entry way of the serotonin pore It forms a number of interactions which hold the molecule in place, completely occluding the pore. One particularly unique interaction involves a clomipramine-Arg-Phe sandwhich involving residues Arg 30 and Phe 253. As mentioned before, this structure is of LeuT and not a SERT, but the structures have significant homology. The structure reveals how Chlomipramine inhibits reuptake. Clomipramine binds to the pore, but also, the closed pore conformation is stabilized by also binding its native ligand, which in this case is leucine, but in the case of a SERT, would be serotonin. The Leucine molecule is bound below the inhibitor and is stabilized by a number of interactions. Typically, a second leucine would likely bind in the clomipramine binding pocket, resulting in leucine release in the presynaptic space. See also Clomipramine.       SSRIs are a second generation of very powerful antidepressants used to treat depression, anxiety disorders, and recently symptoms of autism by preventing SERT function (3gwu). Two well-known SSRIs, Sertraline (Zoloft) and fluoxetine (Prozac) bind in nearly the same location as clomipramine . They are stabilized by a number of interactions with the SERT structure. Interestingly, both of these second generation antidepressants contain halogenated subgroups which interact in very specific ways with the transporter structure. In the case of sertraline, the chlorine atoms on the phenyl ring insert into a pocket dubbed the halogen binding pocket (HBP). This pocket consists of residues Leu 25, Gly 26, Leu 29, Arg 30, Tyr 108, Ile 111, and Phe 253. Several of these residues, Leu 25, Gly 26, Tyr 108, and Phe 253 are also involved in binding the substrate. The binding of Fluoxetine is nearly identical (3gwv) involving nearly all of the same residues. Overall, it is clear the SSRI binds the SERT in a conformation which does not allow entry of other substrates, thus preventing release and reuptake of other Serotonin molecules.       Overall, the discovery of SSRIs was a profound step forward in treating severe disorders which at one point were nearly completely debilitating.

3D structures of serotonin transporter

Updated on 19-November-2023

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• ts3 serotonin transporter
  • Serotonin N-acetyltransferase, Autism – hSERT (mutant) + antibody - human
    
  • pharmaceutical therapeutics, Clomipramine, autism, 3gwu, Sertraline – hSERT + antibody + antidepressant
    
  • fluoxetine, 3gwv, 6awp – hSERT (mutant) + antibody + antidepressant
    
• ts2 serotonin transporter
  • 5i6z – hSERT (mutant) + antibody
    
• Sodium-dependent serotonin transporter
  • 6dzv, 6dzy, 6dzz – hSERT + antibody + ibogaine – Cryo EM
    
  • 6dzw, 6vrh, 6vrk, 6vrl, 6w2b, 6w2c – hSERT + antibody + paroxetine – Cryo EM
    
  • 6awn – hSERT + antibody + cholesterol + paroxetine
    
  • 7li6, 7li8 – hSERT + antibody – Cryo EM
    
  • 7li9 – hSERT + antibody + serotonin – Cryo EM
    
  • 7li7 – hSERT + antibody + cholesterol – Cryo EM
    
  • 7txt – hSERT + antibody + piperazine derivative – Cryo EM
    
  • 7lia, 7mgw – hSERT + antibody + cholesterol + serotonin – Cryo EM
    
  • 7lwd – hSERT + antibody + vilazodone + imipramine – Cryo EM
    
  • 6awo, 6awq – hSERT + antibody + cholesterol + sertraline
    
  • 6awp – hSERT + antibody + cholesterol + fluvoxamine
    
  • 8de4 – hSERT + antibody + cholesterol + methamphetamine – Cryo EM
    
  • 8de3 – hSERT + antibody + cholesterol + cocaine – Cryo EM
    

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This article was developed based on lectures given in Chemistry 543 by Prof. Clarence E. Schutt at Princeton University.

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David Canner, Michal Harel, Alexander Berchansky