7dlk | pdb_00007dlk

Crystal Structure of veratryl alcohol bound Dye Decolorizing peroxidase from Bacillus subtilis

spinqualitylabelsall models 7dlk, resolution 2.10Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 7dlk is a 6 chain structure with sequence from Bacillus subtilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.1Å Ligands: CL, EPE, GOL, HEM, MPD, OXY, PO4, VOH Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function EFEN_BACSU Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the protoporphyrin ring intact (By similarity). Publication Abstract from PubMed Dye-decolorizing peroxidases (DyPs) are heme-containing peroxidases, which have promising application in biodegradation of phenolic lignin compounds and in detoxification of dyes. In this study, the crystal structure of BsDyP- veratryl alcohol (VA) complex delves deep into the binding of small substrate molecules within the DyP heme cavity. The biochemical analysis shows that BsDyP oxidizes the VA with a turnover number of 0.065s(-1), followed by the oxidation of 2,6-dimethoxyphenol (DMP) and guaiacol with a comparable turnover number (kcat) of 0.07s(-1) and 0.07s(-1), respectively. Moreover, biophysical and computational studies reveal the comparable binding affinity of substrates to BsDyP and produce lower-energy stable BsDyP-ligand(s) complexes. All together with our previous findings, we are providing a complete structural description of substrate-binding sites in DyP. The structural insight of BsDyP helps to modulate its engineering to enhance the activity towards the oxidation of a wide range of substrates. Structure of dye-decolorizing peroxidase from Bacillus subtilis in complex with veratryl alcohol.,Dhankhar P, Dalal V, Singh V, Sharma AK, Kumar P Int J Biol Macromol. 2021 Oct 20. pii: S0141-8130(21)02258-3. doi:, 10.1016/j.ijbiomac.2021.10.100. PMID:34687768 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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