4cab | pdb_00004cab

The refined structure of catalase DR1998 from Deinococcus radiodurans at 2.6 A resolution

spinqualitylabelsall models 4cab, resolution 2.60Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4cab is a 4 chain structure with sequence from Deinococcus radiodurans R1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.599Å Ligands: CL, HEM Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function CATA_DEIRA Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide. Publication Abstract from PubMed Deinococcus radiodurans is an aerobic organism with the ability to survive under conditions of high radiation doses or desiccation. As part of its protection system against oxidative stress, this bacterium encodes three mono-functional catalases. The DR1998 catalase belongs to the clade 1, and is present at high levels under normal growth conditions. The crystals of DR1998 catalase diffracted very weakly and the merged diffraction data showed a Rsym of 0.308. Its crystal structure was determined and refined to 2.6 A. The four molecules present in the asymmetric unit originate, by crystallographic symmetry, two homotetramers with 222 point-group symmetry. The overall structure of DR1998 catalase is similar to that of other mono-functional catalases, displaying higher structural homology with the catalase structures of clade 1. Each monomer exhibits the typical catalase fold and contains one heme b in the active site. The heme is coordinated by the proximal ligand Tyr369, and on the heme distal side the essential His81 and Asn159 are hydrogen-bonded to a water molecule. A 25 A long channel is the main channel connecting the active site to the external surface. This channel starts with a hydrophobic region from the catalytic heme site, followed by a hydrophilic region that begins on Asp139 and expands up to the protein surface. Apart from this channel, an alternative channel also nearby the heme active site is presented and discussed. This article is protected by copyright. All rights reserved. Structure of the mono-functional heme catalase DR1998 from Deinococcus radiodurans.,Borges PT, Frazao C, Miranda CS, Carrondo MA, Romao CV FEBS J. 2014 Jun 26. doi: 10.1111/febs.12895. PMID:24975828 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Catalase 3D structures

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