3ezj | pdb_00003ezj

Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody

spinqualitylabelsall models 3ezj, resolution 2.80Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 3ezj is a 8 chain structure with sequence from Escherichia coli ETEC H10407 and Lama glama. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.8Å Ligands: CL, PO4 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function Q707C1_ECOLX Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMed Secretins are among the largest bacterial outer membrane proteins known. Here we report the crystal structure of the periplasmic N-terminal domain of GspD (peri-GspD) from the type 2 secretion system (T2SS) secretin in complex with a nanobody, the VHH domain of a heavy-chain camelid antibody. Two different crystal forms contained the same compact peri-GspD:nanobody heterotetramer. The nanobody contacts peri-GspD mainly via CDR3 and framework residues. The peri-GspD structure reveals three subdomains, with the second and third subdomains exhibiting the KH fold which also occurs in ring-forming proteins of the type 3 secretion system. The first subdomain of GspD is related to domains in phage tail proteins and outer membrane TonB-dependent receptors. A dodecameric peri-GspD model is proposed in which a solvent-accessible beta strand of the first subdomain interacts with secreted proteins and/or T2SS partner proteins by beta strand complementation. Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody.,Korotkov KV, Pardon E, Steyaert J, Hol WG Structure. 2009 Feb 13;17(2):255-65. PMID:19217396 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also General secretion pathway protein 3D structures

Proteopedia Page Contributors and Editors (what is this?)

OCA