7b1y | pdb_00007b1y

DtxR-like iron-dependent regulator IdeR complexed with cobalt and its consensus DNA-binding sequence

spinqualitylabelsall models 7b1y, resolution 2.12Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 7b1y is a 8 chain structure with sequence from Saccharopolyspora erythraea NRRL 2338 and Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.12Å Ligands: CO, CSD Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function A0A2A9J1W2_SACEN Publication Abstract from PubMed The iron-dependent regulator IdeR is the main transcriptional regulator controlling iron homeostasis genes in Actinobacteria, including species from the Corynebacterium, Mycobacterium and Streptomyces genera, as well as the erythromycin-producing bacterium Saccharopolyspora erythraea. Despite being a well-studied transcription factor since the identification of the Diphtheria toxin repressor DtxR three decades ago, the details of how IdeR proteins recognize their highly conserved 19-bp DNA target remain to be elucidated. IdeR makes few direct contacts with DNA bases in its target sequence, and we show here that these contacts are not required for target recognition. The results of our structural and mutational studies support a model wherein IdeR mainly uses an indirect readout mechanism, identifying its targets via the sequence-dependent DNA backbone structure rather than through specific contacts with the DNA bases. Furthermore, we show that IdeR efficiently recognizes a shorter palindromic sequence corresponding to a half binding site as compared to the full 19-bp target previously reported, expanding the number of potential target genes controlled by IdeR proteins. The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.,Marcos-Torres FJ, Maurer D, Juniar L, Griese JJ Nucleic Acids Res. 2021 Sep 27;49(17):10120-10135. doi: 10.1093/nar/gkab711. PMID:34417623 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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