8hfb | pdb_00008hfb
Evolved variant of quercetin 2,4-dioxygenase from Bacillus subtilis
Structural highlights
FunctionQDOI_BACSU Performs the first step in the degradation of the flavonoid quercetin by a dioxygenase reaction. The enzyme catalyzes the cleavage of the O-heteroaromatic ring of the flavonol quercetin yielding the depside 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. This involves the remarkable dioxygenolytic cleavage of two carbon-carbon bonds.[1] Publication Abstract from PubMedThe catalytic functions of metalloenzymes are often strongly correlated with metal elements in the active sites. However, dioxygen-activating nonheme quercetin dioxygenases (QueD) are found with various first-row transition-metal ions when metal swapping inactivates their innate catalytic activity. To unveil the molecular basis of this seemingly promiscuous yet metal-specific enzyme, we transformed manganese-dependent QueD into a nickel-dependent enzyme by sequence- and structure-based directed evolution. Although the net effect of acquired mutations was primarily to rearrange hydrophobic residues in the active site pocket, biochemical, kinetic, X-ray crystallographic, spectroscopic, and computational studies suggest that these modifications in the secondary coordination spheres can adjust the electronic structure of the enzyme-substrate complex to counteract the effects induced by the metal substitution. These results explicitly demonstrate that such noncovalent interactions encrypt metal specificity in a finely modulated manner, revealing the underestimated chemical power of the hydrophobic sequence network in enzyme catalysis. Underlying Role of Hydrophobic Environments in Tuning Metal Elements for Efficient Enzyme Catalysis.,Eom H, Cao Y, Kim H, de Visser SP, Song WJ J Am Chem Soc. 2023 Mar 15;145(10):5880-5887. doi: 10.1021/jacs.2c13337. Epub , 2023 Feb 28. PMID:36853654[2] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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