8y74 | pdb_00008y74

Crystal structure of 9-mer peptide from H9N2 avian influenza virus in complex with BF2*0201

spinqualitylabelsall models 8y74, resolution 1.90Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8y74 is a 6 chain structure with sequence from Gallus gallus and Influenza A virus (A/chicken/Bangladesh/19495/2013(H9N2)). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.9Å Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function O46789_CHICK Publication Abstract from PubMed B2 haplotype major histocompatibility complex (MHC) has been extensively reported to confer resistance to various avian diseases. But its peptide-binding motif is unknown, and the presenting peptide is rarely identified. Here, we identified its peptide-binding motif (X-A/V/I/L/P/S/G-X-X-X-X-X-X-V/I/L) in vitro using Random Peptide Library-based MHC I LC-MS/MS analysis. To further clarify the structure basis of motif, we determined the crystal structure of the BF2 *02:01-PB2(552-560) complex at 1.9 A resolution. We found that BF2 *02:01 had a relatively wide antigen-binding groove, and the structural characterization of pockets was consistent with the characterization of peptide-binding motif. The wider features of the peptide-binding motif and increased number of peptides bound by BF2 *02:01 than BF2 *04:01 might resolve the puzzles for the presence of potential H9N2 resistance in B2 chickens. Afterward, we explored the H9N2 avian influenza virus (AIV)-induced cellular immune response in B2 haplotype chickens in vivo. We found that ratio of CD8(+) T cell and kinetic expression of cytotoxicity genes including Granzyme K, interferon-gamma, NK lysin, and poly-(ADP-ribose) polymerase in peripheral blood mononuclear cells were significantly increased in defending against H9N2 AIV infection. Especially, we selected 425 epitopes as candidate epitopes based on the peptide-binding motif and further identified four CD8(+) T-cell epitopes on H9N2 AIV including NS1(98-106), PB2(552-560), NP(182-190), and NP(455-463) via ELI-spot interferon-gamma detections after stimulating memory lymphocytes with peptides. More importantly, these epitopes were found to be conserved in H7N9 AIV and H9N2 AIV. These findings provide direction for developing effective T cell epitope vaccines using well-conserved internal viral antigens in chickens. Revealing novel and conservative T-cell epitopes with MHC B2 restriction on H9N2 avian influenza virus (AIV).,Jia Y, Wu Q, Li Y, Ma M, Song W, Chen R, Yao Y, Nair V, Zhang N, Liao M, Dai M J Biol Chem. 2024 Jun;300(6):107395. doi: 10.1016/j.jbc.2024.107395. Epub 2024 , May 19. PMID:38768812 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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