5vf4 | pdb_00005vf4

Thermus aquaticus variable protein (TaqVP) from diversity-generating retroelements (DGR)

spinqualitylabelsall models 5vf4, resolution 2.81Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 5vf4 is a 4 chain structure with sequence from Thermus aquaticus Y51MC23. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.81Å Ligands: ACT, CA, MSE Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed Diversity-generating retroelements (DGRs) are widely distributed in bacteria, archaea, and microbial viruses, and bring about unparalleled levels of sequence variation in target proteins. While DGR variable proteins share low sequence identity, the structures of several such proteins have revealed the C-type lectin (CLec)-fold as a conserved scaffold for accommodating massive sequence variation. This conservation has led to the suggestion that the CLec-fold may be useful in molecular surface display applications. Thermostability is an attractive feature in such applications, and thus we studied the variable protein of a DGR encoded by a prophage of the thermophile Thermus aquaticus. We report here the 2.8 A resolution crystal structure of the variable protein from the T. aquaticus DGR, called TaqVP, and confirm that it has a CLec-fold. Remarkably, its variable region is nearly identical in structure to those of several other CLec-fold DGR variable proteins despite low sequence identity among these. TaqVP was found to be thermostable, which appears to be a property shared by several CLec-fold DGR variable proteins. These results provide impetus for the pursuit of the DGR variable protein CLec-fold in molecular display applications. Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein.,Handa S, Shaw KL, Ghosh P PLoS One. 2019 Jan 10;14(1):e0205618. doi: 10.1371/journal.pone.0205618., eCollection 2019. PMID:30629599 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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