8etn | pdb_00008etn

The X-ray Crystal Structure of Tri-Ketone Dioxygenase from Rice

spinqualitylabelsall models 8etn, resolution 3.16Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8etn is a 4 chain structure with sequence from Oryza sativa. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 3.16Å Ligands: MSE Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Publication Abstract from PubMed The transgenic expression of rice triketone dioxygenase (TDO; also known as HIS1) can provide protection from triketone herbicides to susceptible dicot crops such as soybean. Triketones are phytotoxic inhibitors of plant hydroxyphenylpyruvate dioxygenases (HPPD). The TDO gene codes for an iron/2-oxoglutarate-dependent oxidoreductase. We obtained an X-ray crystal structure of TDO using SeMet-SAD phasing to 3.16 A resolution. The structure reveals that TDO possesses a fold like that of Arabidopsis thaliana 2-oxoglutarate‑iron-dependent oxygenase anthocyanidin synthase (ANS). Unlike ANS, this TDO structure lacks bound metals or cofactors, and we propose this is because the disordered flexible loop over the active site is sterically constrained from folding properly in the crystal lattice. A combination of mass spectrometry, nuclear magnetic resonance, and enzyme activity studies indicate that rice TDO oxidizes mesotrione in a series of steps; first producing 5-hydroxy-mesotrione and then oxy-mesotrione. Evidence suggests that 5-hydroxy-mesotrione is a much weaker inhibitor of HPPD than mesotrione, and oxy-mesotrione has virtually no inhibitory activity. Of the close homologues which have been tested, only corn and rice TDO have enzymatic activity and the ability to protect plants from mesotrione. Correlating sequence and structure has identified four amino acids necessary for TDO activity. Introducing these four amino acids imparts activity to a mesotrione-inactive TDO-like protein from sorghum, which may expand triketone herbicide resistance in new crop species. Structural and functional characterization of triketone dioxygenase from Oryza Sativa.,Duff SMG, Zhang M, Zinnel F, Rydel T, Taylor CM, Chen D, Tilton G, Mamanella P, Duda D, Wang Y, Xiang B, Karunanandaa B, Varagona R, Chittoor J, Qi Q, Hall E, Garvey G, Zeng J, Zhang J, Li X, White T, Jerga A, Haas J Biochim Biophys Acta Gen Subj. 2024 Feb;1868(2):130504. doi: , 10.1016/j.bbagen.2023.130504. Epub 2023 Nov 13. PMID:37967728 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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