4e04 | pdb_00004e04

RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis.

spinqualitylabelsall models 4e04, resolution 1.79Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 4e04 is a 2 chain structure with sequence from Rhodopseudomonas palustris CGA009. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 1.79Å Ligands: LBV Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function Q6N5G3_RHOPA Publication Abstract from PubMed Bacteriophytochromes (BphPs) are biliverdin IXalpha-containing photoreceptors that photoconvert between red (Pr) and far-red (Pfr) absorbing states. BphPs are one half of a two-component system that transmits a light signal to a histidine kinase domain and then to a gene-response regulator. In Rhodopseudomonas palustris, synthesis of a light-harvesting complex (LH4) is controlled by two BphPs (RpBphP2 and RpBphP3). Despite their high sequence identity (52%), their absorption spectra are very different. The spectra of RpBphP2 exhibit classic Pr-to-Pfr photoconversion, whereas RpBphP3 quenches and a high-energy Pnr state emerges [Giraud et al. (2005), J. Biol. Chem. 280, 32389-32397]. Crystallization of the chromophore-binding domain (CBD) of RpBphP2 (RpBphP2-CBD) proved to be difficult and the structure of RpBphP3-CBD was used to crystallize RpBphP2-CBD* using homologue-directed mutagenesis. The structure shows that dimerization is an important factor in successful crystallization of RpBphP2-CBD* and arises from an N136R mutation. Mutations at this site correlate with an ability to dimerize in other truncated BphPs and may also be important for full-length dimer formation. Comparison of the RpBphP3-CBD and RpBphP2-CBD* biliverdin IXalpha pockets revealed that the former has additional hydrogen bonding around the B and D pyrrole rings that may constrain photoconversion to Pfr, resulting in a strained photoexcited Pnr state. Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis.,Bellini D, Papiz MZ Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):1058-66. Epub 2012 Jul 17. PMID:22868772 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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