8po5 | pdb_00008po5
Lactobacillus plantarum LpdD
Structural highlights
FunctionLPDD_LACPL Probably involved in tannin degradation, however the precise biochemical function in metabolism of gallate is unknown.[1] Publication Abstract from PubMedThe UbiD enzyme family of prenylated flavin (prFMN)-dependent reversible decarboxylases is near ubiquitously present in microbes. For some UbiD family members, enzyme activation through prFMNH(2) binding and subsequent oxidative maturation of the cofactor readily occurs, both in vivo in a heterologous host and through in vitro reconstitution. However, isolation of the active holo-enzyme has proven intractable for others, notably the canonical Escherichia coli UbiD. We show that E. coli heterologous expression of the small protein LpdD-associated with the UbiD-like gallate decarboxylase LpdC from Lactobacillus plantarum-unexpectedly leads to 3,4-dihydroxybenzoic acid decarboxylation whole-cell activity. This activity was shown to be linked to endogenous E. coli ubiD expression levels. The crystal structure of the purified LpdD reveals a dimeric protein with structural similarity to the eukaryotic heterodimeric proteasome assembly chaperone Pba3/4. Solution studies demonstrate that LpdD protein specifically binds to reduced prFMN species only. The addition of the LpdD-prFMNH(2) complex supports reconstitution and activation of the purified E. coli apo-UbiD in vitro, leading to modest 3,4-dihydroxybenzoic acid decarboxylation. These observations suggest that LpdD acts as a prFMNH(2)-binding chaperone, enabling apo-UbiD activation through enhanced prFMNH(2) incorporation and subsequent oxidative maturation. Hence, while a single highly conserved flavin prenyltransferase UbiX is found associated with UbiD enzymes, our observations suggest considerable diversity in UbiD maturation, ranging from robust autocatalytic to chaperone-mediated processes. Unlocking the full (de)carboxylation scope of the UbiD-enzyme family will thus require more than UbiX coexpression. The prFMNH(2)-binding chaperone LpdD assists UbiD decarboxylase activation.,Gahloth D, Fisher K, Marshall S, Leys D J Biol Chem. 2024 Feb;300(2):105653. doi: 10.1016/j.jbc.2024.105653. Epub 2024 , Jan 13. PMID:38224946[2] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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