1u9p | pdb_00001u9p
Permuted single-chain Arc
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Overview
We designed a single-chain variant of the Arc repressor homodimer in which, the beta strands that contact operator DNA are connected by a hairpin turn, and the alpha helices that form the tetrahelical scaffold of the dimer are, attached by a short linker. The designed protein represents a noncyclic, permutation of secondary structural elements in another single-chain Arc, molecule (Arc-L1-Arc), in which the two subunits are fused by a single, linker. The permuted protein binds operator DNA with nanomolar affinity, refolds on the sub-millisecond time scale, and is as stable as Arc-L1-Arc., The crystal structure of the permuted protein reveals an essentially, wild-type fold, demonstrating that crucial folding information is not, encoded in the wild-type order of secondary structure. Noncyclic, rearrangement of secondary structure may allow grouping of critical, active-site residues in other proteins and could be a useful tool for, protein design and minimization.
About this Structure
1U9P is a Protein complex structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Consolidating critical binding determinants by noncyclic rearrangement of protein secondary structure., Tabtiang RK, Cezairliyan BO, Grant RA, Cochrane JC, Sauer RT, Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2305-9. Epub 2005 Feb 2. PMID:15689399
Page seeded by OCA on Wed Nov 21 03:56:48 2007
