User:Wayne Decatur/Sandboxmangai

Isochorismate-Pyruvate Lyase: open conformation with pyruvate bound morphing to closed conformation with pyruvate bound

made by chains A and B of 2h9d morphed to chains C and D

	spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D
	1atu1ezxwd.pdb (1atu1ezxwd.pdb), resolution XXXÅ (initial scene).

Click here to initiate the animation showing morph with all 8 models obtained from editing sets of chains A and B and chains C and D to be submitted to Yale Morph server.
Copied C and D and pyruvates to new files. For chains A and B file, I deleted C and D and CA heteroatom. Used alter command (example for chain c= select chain C; alter (chain C),chain='A') in pymol to change names of C and D chains in file to A and B. Then removed some residues with gaps to match better but seemed unnecessary because one worked before doing that but I thought it failed because went to spam.

Found out about alter command at https://pymol.sourceforge.net/newman/ref/S1000comref.html. Ran sort command after each altering.

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Wayne Decatur