Sandbox27

Bacteriorhodopsin

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Chem 490A: Proteopedia Assignment

The alpha helices shown in pink represent some of the hydrophobic elements throughout the crystallized structure of bacteriorhodopsin. The beta strands, another type of hydrophobic element in the protein, are shown in purple, while the ligands embedded within the protein are displayed in yellow. Information from 1kme.

spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D load='1kme' size='350' frame='false' scene=
1kme, resolution 2.00Å (default scene)
Ligands:	BGC, RET, SQU
Structural annotation: Resources: CATH : 1Kmea00, 1Kmeb00 InterPro : Ipr001425 Pfam : PF01036 SCOP : d1kmea_, d1kmeb_ UniProt : P02945
Functional annotation: Cellular component: membrane integral to membrane Biological process: response to stimulus transport protein-chromophore linkage phototransduction ion transport proton transport Molecular function: hydrogen ion transmembrane transporter activity photoreceptor activity receptor activity ion channel activity
Evolutionary conservation: Toggle Conservation Colors: Rows = identical sequences: Further Information: Caveats, Explanation, Complete Results at ConSurfDB
Resources:	FirstGlance, OCA, PDBsum, RCSB
Coordinates:	save as pdb, mmCIF, xml

Contributors: Meenal Datta