CONTACTS: NON-COVALENT (AND COVALENT) INTERACTIONS WITH TARGET: Chain A
Listing by FirstGlance in Jmol
DEFINITIONS by FirstGlance for Contacts & Non-Covalent Interactions
atoms make up the entire target.
According to the checkboxes currently checked, 154
atoms are currently shown contacting the target.
(If not all checkboxes are currently checked, some additional contacts may not be shown.)
All non-covalent bonds listed below are putative
When all checkboxes are checked
, the following numbers of contacting atoms are displayed:
|Category||Atoms contacting target||Find..*||Target atoms being contacted||Find..*|
|Hydrogen-bonded water†||47 water oxygen atoms||~cont_hbonds and water and oxygen||59 target atoms contacting water||~targ_to_water|
|Water in water bridges‡||10 water oxygen atoms||~water_bridges and water and oxygen||14 target atoms in water bridges||~water_bridges and ~contarget|
|Water bridged non-water||12 non-water atoms||~water_bridges and not (water or ~contarget)||ditto||ditto|
|Hydrogen-bonded non-water||32 non-water atoms||~cont_hbonds and not water||30 target atoms||~targ_hbonds|
|Hydrophobic apolar van der Waals interactions||64 contacting carbon or sulfur atoms||~cont_hphob||57 target carbon or sulfur atoms||~targ_hphob|
|Protein to protein salt bridges ||7 contacting charged atoms||~cont_sb||6 target charged atoms||~targ_sb|
|Protein to protein salt bridges involving ends of chains§‡||3 contacting charged atoms||~cont_sb_ends||2 target charged atoms||~targ_sb_ends|
|Protein to protein cation-pi interactions ||7 contacting atoms||~cont_catpi||7 target atoms||~targ_catpi|
|Protein to protein cation-pi interactions involving ends of chains§‡ ||7 contacting atoms||~cont_catpi_nterm or ~cont_catpi_endrings||7 target atoms||~targ_catpi_nterm or ~targ_catpi_endrings|
|Metal and miscellaneous interactions ||0 contacting atoms||~cont_memi||0 target atoms||~targ_memi|
*These terms can be used in the Find..
dialog in the Focus box of FirstGlance to put halos on the corresponding atoms.
counts include atoms in water bridges. To find only the atoms not in
water bridges, add "and not ~water_bridges" at the ends of the terms in
‡These counts are included in the counts in the previous row.
§Protein to protein salt bridges or cation-pi interactions involving ends of chains can be sidechain-to-end or end-to-end. Ends..
(Tools tab) has a link to put halos on all chain termini. Salt Bridges & Cation-Pi..
(Tools tab) has a link to list all salt-bridged atoms. 1hxw has both
salt bridges and cation-pi interactions involving ends of chains: Find
1-16 and target contacts to atoms with halos.