FOR 7RIN.
SEPARATION DISTANCES BETWEEN ALTERNATE LOCATIONS (CONFORMATIONS) OF BACKBONE ATOMS
(alpha carbons/nucleic phosphorus atoms)
REPORTED BY FirstGlance in Jmol.
This tab-delimited list is spreadsheet-ready for sorting and averaging (see procedure at bottom below).
To save this page so it can be viewed in a web browser, File, Save As, Web Page, Complete.
Res# = Residue name, see Standard Residues.
Seq# = Sequence Number.
Break = A sequence number marked § is not consecutive with the previous sequence number.
Atom CA = Carbon Alpha.
Atom P = Phosphorus.
Conformation 1 Conformation 2
⤋⤋⤋ ――――――――――――――――――――――――――――――――――――――――――――――― ―――――――――――――――――――――――――――――――――――――――
Row Res1 Seq1 Break Chain1 Atom1 AltLoc1 Res2 Seq2 Chain2 Atom2 Altloc2 Separation, Å
1 SER 32 § A CA %A SER 32 A CA %B 0.04
2 ARG 47 § A CA %A ARG 47 A CA %B 0.06
3 LYS 73 § A CA %A LYS 73 A CA %B 0.08
4 ARG 79 § A CA %A ARG 79 A CA %B 0.09
5 SER 80 A CA %A SER 80 A CA %B 0.20
6 VAL 92 § A CA %A VAL 92 A CA %B 0.05
7 ARG 105 § A CA %A ARG 105 A CA %B 0.15
8 GLU 115 § A CA %A GLU 115 A CA %B 0.09
9 CYS 121 § A CA %A CYS 121 A CA %B 0.23
10 SER 151 § A CA %A SER 151 A CA %B 0.39
11 TYR 152 A CA %A TYR 152 A CA %B 1.55
12 TYR 153 A CA %A TYR 153 A CA %B 0.70
13 GLN 157 § A CA %A GLN 157 A CA %B 0.06
14 GLU 167 § A CA %A GLU 167 A CA %B 0.20
15 TYR 176 § A CA %A TYR 176 A CA %B 0.63
16 THR 177 A CA %A THR 177 A CA %B 0.77
17 THR 178 A CA %A THR 178 A CA %B 1.08
18 TRP 179 A CA %A TRP 179 A CA %B 0.85
19 PRO 180 A CA %A PRO 180 A CA %B 3.11
20 ASP 181 A CA %A ASP 181 A CA %B 5.02
21 PHE 182 A CA %A PHE 182 A CA %B 5.90
22 GLY 183 A CA %A GLY 183 A CA %B 2.56
23 VAL 184 A CA %A VAL 184 A CA %B 1.41
24 PRO 185 A CA %A PRO 185 A CA %B 2.42
25 GLU 186 A CA %A GLU 186 A CA %B 3.92
26 SER 187 A CA %A SER 187 A CA %B 1.54
27 PRO 188 A CA %A PRO 188 A CA %B 0.84
28 ALA 189 A CA %A ALA 189 A CA %B 0.58
29 SER 190 A CA %A SER 190 A CA %B 0.73
30 PHE 191 A CA %A PHE 191 A CA %B 0.72
31 LEU 192 A CA %A LEU 192 A CA %B 0.28
32 ASN 193 A CA %A ASN 193 A CA %B 0.21
33 LYS 197 § A CA %A LYS 197 A CA %B 0.04
34 SER 216 § A CA %A SER 216 A CA %B 0.44
35 ARG 221 § A CA %A ARG 221 A CA %B 0.03
36 CYS 226 § A CA %A CYS 226 A CA %B 0.16
37 MET 235 § A CA %A MET 235 A CA %B 0.07
38 ARG 238 § A CA %A ARG 238 A CA %B 0.91
39 LYS 239 A CA %A LYS 239 A CA %B 5.12
40 ASP 240 A CA %A ASP 240 A CA %B 3.28
41 PRO 241 A CA %A PRO 241 A CA %B 3.14
42 SER 242 A CA %A SER 242 A CA %B 1.11
43 SER 243 A CA %A SER 243 A CA %B 0.68
44 ILE 246 § A CA %A ILE 246 A CA %B 0.07
45 GLU 252 § A CA %A GLU 252 A CA %B 0.06
46 MET 253 A CA %A MET 253 A CA %B 0.05
47 GLN 262 § A CA %A GLN 262 A CA %B 0.06
48 GLU 276 § A CA %A GLU 276 A CA %B 0.02
49 PHE 280 § A CA %A PHE 280 A CA %B 0.19
⤊⤊⤊
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Spreadsheet Procedure:
- Copy only the above rows between the above rows beginning ⤋⤋⤋ and ⤊⤊⤊.
- MICROSOFT EXCEL:
-- Open a new, blank spreadsheet. Click cell A1.
-- Edit, Paste Special, Text.
-- Auto-set all column widths: Select entire sheet (Ctrl-A or Cmd-A), double click on any
column boundary in the row of column letters at the top.
-- Delete blank rows: Select the Group1 column (click on column B at the top).
In the Home tab, open Find & Select, click on Go to Special...,
check Blanks, OK. Right click on a selected cell, Delete..., Entire row.
-- Delete all asterisks (*): Edit menu at top, Find..., Replace....
Enter ~* (tilde asterisk) in the Find slot, and nothing in the Replace slot. Replace all.
- GOOGLE SHEETS:
-- Use the Chrome Browser.
-- Go to sheets.google.com.
-- Login (or create a login, recording your password safely).
-- Click the big + to open a new sheet.
-- Open the Sheet Edit menu, Paste Special, Values Only.
(If asked to install the free Chrome Extension Google Docs Offline, do that first.)
-- Auto-set all column widths: Click A above the first column to select the entire column. Holding down Shift,
click the letter above the last occupied column to select all columns. Double-click a column boundary.
-- Delete all asterisks (*): Open the Sheets Edit menu and click Find and Replace. The rest is straightforward.
-- Sort by multiple columns: Ctrl-A (macOS Cmd-A) twice to select all data. Open Data, Sort Range, Advanced Options.
Check "Data has header row". The rest is straightforward.
-- (Blank rows will gather at the end after sorting.)
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