2f1k

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Crystal structure of Synechocystis arogenate dehydrogenase

Structural highlights

2f1k is a 4 chain structure with sequence from Synechocystis sp. PCC 6803. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.55Å
Ligands:NAP, OCS, OMT, TRS
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

P73906_SYNY3

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The extreme diversity in substrate specificity, and in the regulation mechanism of arogenate/prephenate dehydrogenase enzymes in nature, makes a comparative structural study of these enzymes of great interest. We report here on the biochemical and structural characterization of arogenate dehydrogenase from Synechocystis sp. (TyrAsy). This work paves the way for the understanding of the structural determinants leading to diversity in substrate specificity, and of the regulation mechanisms of arogenate/prephenate dehydrogenases. The overall structure of TyrAsy in complex with NADP was refined to 1.6 A. The asymmetric unit contains two TyrAsy homodimers, with each monomer consisting of a nucleotide binding N-terminal domain and a particularly unique alpha-helical C-terminal dimerization domain. The substrate arogenate was modeled into the active site. The model of the ternary complex enzyme-NADP-arogenate nicely reveals at the atomic level the concerted mechanism of the arogenate/prephenate dehydrogenase reaction.

Biochemical characterization and crystal structure of Synechocystis arogenate dehydrogenase provide insights into catalytic reaction.,Legrand P, Dumas R, Seux M, Rippert P, Ravelli R, Ferrer JL, Matringe M Structure. 2006 Apr;14(4):767-76. PMID:16615917[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Legrand P, Dumas R, Seux M, Rippert P, Ravelli R, Ferrer JL, Matringe M. Biochemical characterization and crystal structure of Synechocystis arogenate dehydrogenase provide insights into catalytic reaction. Structure. 2006 Apr;14(4):767-76. PMID:16615917 doi:http://dx.doi.org/10.1016/j.str.2006.01.006

Contents


PDB ID 2f1k

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