6eyn

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Structure of the 8D6 (anti-IgE) Fab

Structural highlights

6eyn is a 6 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:EDO, PEG, SO4
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Immunoglobulin E (IgE) antibodies play a central role in the allergic response: interaction with FcepsilonRI on mast cells and basophils leads to immediate hypersensitivity reactions upon allergen challenge, while interaction with CD23/FcepsilonRII, expressed on a variety of cells, regulates IgE synthesis among other activities. The receptor-binding IgE-Fc region has recently been found to display remarkable flexibility, from acutely bent to extended conformations, with allosteric communication between the distant FcepsilonRI and CD23 binding sites. We report the structure of an anti-IgE antibody Fab (8D6) bound to IgE-Fc through a mixed protein-carbohydrate epitope, revealing further flexibility and a novel extended conformation with potential relevance to that of membrane-bound IgE in the B cell receptor for antigen. Unlike the earlier, clinically approved anti-IgE antibody omalizumab, 8D6 inhibits binding to FcepsilonRI but not CD23; the structure reveals how this discrimination is achieved through both orthosteric and allosteric mechanisms, supporting therapeutic strategies that retain the benefits of CD23 binding.

Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody.,Chen JB, Ramadani F, Pang MOY, Beavil RL, Holdom MD, Mitropoulou AN, Beavil AJ, Gould HJ, Chang TW, Sutton BJ, McDonnell JM, Davies AM Sci Rep. 2018 Aug 1;8(1):11548. doi: 10.1038/s41598-018-29664-4. PMID:30069035[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Chen JB, Ramadani F, Pang MOY, Beavil RL, Holdom MD, Mitropoulou AN, Beavil AJ, Gould HJ, Chang TW, Sutton BJ, McDonnell JM, Davies AM. Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody. Sci Rep. 2018 Aug 1;8(1):11548. doi: 10.1038/s41598-018-29664-4. PMID:30069035 doi:http://dx.doi.org/10.1038/s41598-018-29664-4

Contents


PDB ID 6eyn

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