6m62

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Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Structural highlights

6m62 is a 10 chain structure with sequence from Saccharomyces cerevisiae S288C. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 3.2Å
Ligands:GTP, MG, ZN
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RPF2_YEAST Required for biogenesis of the 60S ribosomal subunit.[1]

Publication Abstract from PubMed

The protein composition and structure of assembling 60S ribosomal subunits undergo numerous changes as pre-ribosomes transition from the nucleolus to the nucleoplasm. This includes stable anchoring of the Rpf2 subcomplex containing 5S rRNA, rpL5, rpL11, Rpf2 and Rrs1, which initially docks onto the flexible domain V of rRNA at earlier stages of assembly. In this work, we tested the function of the C-terminal domain (CTD) of Rpf2 during these anchoring steps, by truncating this extension and assaying effects on middle stages of subunit maturation. The rpf2Delta255-344 mutation affects proper folding of rRNA helices H68-70 during anchoring of the Rpf2 subcomplex. In addition, several assembly factors (AFs) are absent from pre-ribosomes or in altered conformations. Consequently, major remodeling events fail to occur: rotation of the 5S RNP, maturation of the peptidyl transferase center (PTC) and the nascent polypeptide exit tunnel (NPET), and export of assembling subunits to the cytoplasm.

Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly.,Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford JL Jr Nat Commun. 2020 Jul 27;11(1):3751. doi: 10.1038/s41467-020-17534-5. PMID:32719344[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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Citations
2 reviews cite this structure
Ribosome biogenesis factors-from names to functions.
Dörner et al. (2023)
1 more
16 other articles
No citations found

See Also

References

  1. ↑ Bogengruber E, Briza P, Doppler E, Wimmer H, Koller L, Fasiolo F, Senger B, Hegemann JH, Breitenbach M. Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes. FEMS Yeast Res. 2003 Mar;3(1):35-43. PMID:12702244
  2. ↑ Micic J, Li Y, Wu S, Wilson D, Tutuncuoglu B, Gao N, Woolford JL Jr. Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly. Nat Commun. 2020 Jul 27;11(1):3751. PMID:32719344 doi:10.1038/s41467-020-17534-5

Contents


PDB ID 6m62

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OCA

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