6p6a

From Proteopedia

Jump to: navigation, search

Structure of Mouse Importin alpha - NIT2 NLS peptide complex

Structural highlights

6p6a is a 3 chain structure with sequence from Mus musculus and Neurospora crassa OR74A. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.151Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NIT2_NEUCR Major nitrogen regulatory protein. During conditions of nitrogen limitation it turns on the expression of genes for enzymes which are required for the use of a variety of secondary nitrogen sources, including nitrates, purines, amino acids, and proteins.[1]

Publication Abstract from PubMed

Importin-alpha (Impalpha) is an adaptor protein that binds to cargo proteins (containing Nuclear Localization Sequences - NLSs), for their translocation to the nucleus. The specificities of the Impalpha/NLS interactions have been studied, since these features could be used as important tools to find potential NLSs in nuclear proteins or even for the development of targets to inhibit nuclear import or to design peptides for drug delivery. Few structural studies have compared different Impalpha variants from the same organism or Impalpha of different organisms. Previously, we investigated nuclear transport of transcription factors with Neurospora crassa Impalpha (NcImpalpha). Herein, NIT-2 and PAC-3 transcription factors NLSs were studied in complex with Mus musculus Impalpha (MmImpalpha). Calorimetric assays demonstrated that the PAC-3 NLS peptide interacts with both Impalpha proteins with approximately the same affinity. The NIT-2 NLS sequence binds with high affinity to the Impalpha major binding site from both organisms, but its binding to minor binding sites reveals interesting differences due to the presence of additional interactions of NIT-2-NLS with MmImpalpha. These findings, together with previous results with Impalpha from other organisms, indicate that the differential affinity of NLSs to minor binding sites may be also responsible for the selectivity of some cargo proteins recognition and transport.

Comparative study of the interactions between fungal transcription factor nuclear localization sequences with mammalian and fungal importin-alpha.,Bernardes NE, Fukuda CA, da Silva TD, de Oliveira HC, de Barros AC, Dreyer TR, Bertolini MC, Fontes MRM Sci Rep. 2020 Jan 29;10(1):1458. doi: 10.1038/s41598-020-58316-9. PMID:31996719[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

Loading citation details..
No citations found

See Also

References

  1. Xiao X, Fu YH, Marzluf GA. The negative-acting NMR regulatory protein of Neurospora crassa binds to and inhibits the DNA-binding activity of the positive-acting nitrogen regulatory protein NIT2. Biochemistry. 1995 Jul 11;34(27):8861-8. doi: 10.1021/bi00027a038. PMID:7612627 doi:http://dx.doi.org/10.1021/bi00027a038
  2. Bernardes NE, Fukuda CA, da Silva TD, de Oliveira HC, de Barros AC, Dreyer TR, Bertolini MC, Fontes MRM. Comparative study of the interactions between fungal transcription factor nuclear localization sequences with mammalian and fungal importin-alpha. Sci Rep. 2020 Jan 29;10(1):1458. doi: 10.1038/s41598-020-58316-9. PMID:31996719 doi:http://dx.doi.org/10.1038/s41598-020-58316-9

Contents


PDB ID 6p6a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools