7kr4

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Human DNA Ligase 1(E346A/E592A) Bound to a nicked DNA substrate control duplex

Structural highlights

7kr4 is a 4 chain structure with sequence from Homo sapiens and Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:ACT, AMP
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DNLI1_HUMAN DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.

Publication Abstract from PubMed

DNA ligase 1 (LIG1, Cdc9 in yeast) finalizes eukaryotic nuclear DNA replication by sealing Okazaki fragments using DNA end-joining reactions that strongly discriminate against incorrectly paired DNA substrates. Whether intrinsic ligation fidelity contributes to the accuracy of replication of the nuclear genome is unknown. Here, we show that an engineered low-fidelity LIG1(Cdc9) variant confers a novel mutator phenotype in yeast typified by the accumulation of single base insertion mutations in homonucleotide runs. The rate at which these additions are generated increases upon concomitant inactivation of DNA mismatch repair, or by inactivation of the Fen1(Rad27) Okazaki fragment maturation (OFM) nuclease. Biochemical and structural data establish that LIG1(Cdc9) normally avoids erroneous ligation of DNA polymerase slippage products, and this protection is compromised by mutation of a LIG1(Cdc9) high-fidelity metal binding site. Collectively, our data indicate that high-fidelity DNA ligation is required to prevent insertion mutations, and that this may be particularly critical following strand displacement synthesis during the completion of OFM.

High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication.,Williams JS, Tumbale PP, Arana ME, Rana JA, Williams RS, Kunkel TA Nat Commun. 2021 Jan 20;12(1):482. doi: 10.1038/s41467-020-20800-1. PMID:33473124[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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See Also

References

  1. Williams JS, Tumbale PP, Arana ME, Rana JA, Williams RS, Kunkel TA. High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication. Nat Commun. 2021 Jan 20;12(1):482. PMID:33473124 doi:10.1038/s41467-020-20800-1

Contents


PDB ID 7kr4

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