9l49

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Crystal structure of HLA-C*12:03-RV9

Structural highlights

9l49 is a 3 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q2UV93_HUMAN Involved in the presentation of foreign antigens to the immune system.[ARBA:ARBA00002297]

Publication Abstract from PubMed

Micropolymorphisms drastically shape the antigen presentation characteristics of human leukocyte antigen class I (HLA-I) molecules, with profound implications for immune responses and disease susceptibility. HLA-C*12:02 and HLA-C*12:03 are closely related HLA-I allotypes that differ by a single amino acid substitution (R97W) but exhibit distinct associations with disease. HLA-C*12:02 has been shown to provide protective effects against HIV infection, playing a crucial role in controlling viral replication and slowing disease progression, whereas HLA-C*12:03 is associated with increased susceptibility to psoriasis. We determined the X-ray crystal structures of the two allotypes presenting MARELHPEY (MY9) and RAFPGLRYV (RV9). Peptide residues that function as anchors, as well as those accessible for T-cell antigen receptor (TCR) contact, were identified. Our results, combined with those of biochemical studies, demonstrated that the R97W variation alters the peptide-binding groove (PBG) volume and charge, leading to conformational and stability changes in pHLA-C*12 complexes and ultimately affecting peptide-binding preferences for the two HLA-C*12 allotypes. This research not only advances our understanding of the impact of HLA-I micropolymorphisms but also offers clues for the use of structure-guided therapeutics to interfere with peptide binding.

Biochemical and structural insights into position 97 micropolymorphisms in human leukocyte antigen (HLA)-C*12 allotypes and their differential disease associations.,Yang M, Zhong P, Liu Q, Jiao H, Lei J, Wei P Int J Biol Macromol. 2025 Mar 6;306(Pt 3):141681. doi: , 10.1016/j.ijbiomac.2025.141681. PMID:40044006[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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References

  1. Yang M, Zhong P, Liu Q, Jiao H, Lei J, Wei P. Biochemical and structural insights into position 97 micropolymorphisms in human leukocyte antigen (HLA)-C*12 allotypes and their differential disease associations. Int J Biol Macromol. 2025 Mar 6;306(Pt 3):141681. PMID:40044006 doi:10.1016/j.ijbiomac.2025.141681

Contents


PDB ID 9l49

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