Spike protein 3D structures

5wrg, 5xlr, 6acc, 6acd, 6x2b, 6xr8, 6xra, 6zb4, 6zb5, 6zge, 6zgg, 6zgh, 6zgi, 7dzw, 7fb0, 7fb1, 7fb3, 7fb4, 7m0j, 7zh1, 7zh2, 7zh5, 8d55, 8d56, 8d5a, 8fez, 8h15, 8h16, 8h3d – hscvSpi – human SARS-CoV – Cryo EM

6crv, 6crw, 6crx, 6crz, 6cs0, 6cs1, 6x29, 6x2a, 6x2c, 6zox, 6zoy, 6zoz, 6zp0, 6zp1, 6zp2, 7bnm, 7cn9, 7kdg, 7kdh, 7kdi, 7kdj, 7kdk, 7kdl, 7ke4, 7ke6, 7ke7, 7ke8, 7ke9, 7kea, 7keb, 7kec, 7krq, 7krr, 7krs, 7lwi, 7lwj, 7lwk, 7lwl, 7lwm, 7lwn, 7lwo, 7lwp, [[[7lwq]], 7lww, 7mjg, 7od3, 7odl, 7sxr, 7sxs, 7sxt, 7sxu, 7sxv, 7sxw, 7tp1, 7vhn, 7xtz, 7xu0, 7xu1, 7xu2, 7xu3, 7xu4, 7xu5, 7xu6, 8csa, 8h0x, 8h0y, 8h0z, 8h10, 8h11, 8h12, 8h13, 8h14, 8p99, 8p9y, 8t21 – hscvSpi (mutant) – Cryo EM

1wnc – hscvSpi HR1 motif

7r95 – hscvSpi HR1- NMR

6lvn – hscvSpi HR2

2fxp – hscvSpi HR2 motif 1140-1193 - NMR

7owx – hscvSpi stalk 1177-1203

2ghv – hscvSpi RBD

7tpk – hscvSpi RBD (mutant) – Cryo EM

5xjk – hscvSpi 758-821 - NMR

1wyy – hscvSpi 885-1189

1zv7, 1zv8, 1zva, 1zvb – hscvSpi 1150-1193

8fdw, 7e9t – hscvSpi 686-1273 – Cryo EM

7lc8 – hscvSpi TM - NMR

7wxz, 7y9n, 7zr2 – hscvSpi HR1 + HR2

7rzq, 7rzs, 8czi – hscvSpi HR1 + HR2 – Cryo EM

7rzr, 7rzt, 7rzu, 7rzv, 8fa1 – hscvSpi HR1 (mutant) + HR2 – Cryo EM

8fa2 – hscvSpi HR1 + 42G – Cryo EM

6u7h – hcv229Spi – human coronavirus 229E – Cryo EM

5zuv, 5zvm – hcv229Spi HR1 motif 785-873

5yl9, 5zhy – hcv229Spi HR1+HR2 motifs

5x58, 5x5b – Spi – human SARS coronavirus BJ01 – Cryo EM

6vsb, 6vxx, 6vyb – hsc2Spi – human SARS coronavirus 2 – Cryo EM

6lxt – hscSpi HR1+HR2 motifs

5szs – hcnSpi – human coronavirus NL63 - Cryo EM

2ieq – hcnSpi HR1+HR2 motifs

6cv0 – Spi – infectious bronchitis coronavirus – Cryo EM

2lcz, 2lcy - ZevSpi fusion loop 507-560 - Zaire ebolavirus - NMR

2m5f, 2mb1 - ZevSpi fusion loop (mutant) - NMR

8dli – hscvSpi – Cryo EM

7vx1, 7wev, 8dll – hscvSpi – Cryo EM

5gnb, 5kwb – hscvSpi RBD

7sbp, 7sbs, 8dlo – hscvSpi – Cryo EM

7sbt – hscvSpi (mutant) – Cryo EM

7sbk, 7sbl, 7tey, 7w94 – hscvSpi – Cryo EM

7sbo, 7tl1, 7tl9, 7tou, 7tov, 7tox, 7toy, 7toz, [[[7tp0]], 7tp2, 7tp7, 7tp8, 7tp9, 7tpa, 7tpc, 7tpe, 7tpf, 7tph, 7tpl, 7vhh, 7w92 – hscvSpi (mutant) – Cryo EM

8dlt – hscvSpi – Cryo EM

7sbq, 7sbr, 7tf2, 7tf5, 7vxe, 7vxi – hscvSpi – Cryo EM

7tf3 – hscvSpi (mutant) – Cryo EM

7tf1, 7tf4 – hscvSpi RBD – Cryo EM

7t9j, 7tge, 8dm1 – hscvSpi – Cryo EM

7tei – hscvSpi (muant) – Cryo EM

7tf8, 7ub0, 7ub5, 7ub6, 7x1m, 7y9s – hscvSpi (mutant) – Cryo EM

8dm2 – hscvSpi NTD – Cryo EM

7xiz – hscvSpi RBD – Cryo EM

7lyk, 7lyl, [[7lym], 7lyn, 7lyo, 7lyp, 7lyq – hscvSpi (mutant) – Cryo EM

7fjn, 7fjo – hscvSpi (mutant) + antibody– Cryo EM

7lws, 7lwt, 7lwu, 7lwv – hscvSpi (mutant) – Cryo EM

5x59, 5x5c, 5x5f, 6q04, 6q05, 6q06, 6q07, 7yn0 – McvSpi – Cryo EM

7ymt, 7ymv, 7ymw, 7ymx, 7ymy, 7ymz – McvSpi (mutant) – Cryo EM

5x4r, 5x4s – McvSpi NTD – Cryo EM

5vyh – McvSpi NTD

4zpw, 4kqz – McvSpi RBD

4mod – McvSpi HR1+HR2 motifs

6nb6, 6nb7, 7cwl, 7cwm, 7cwn, 7cwt, 7dzx, 7dzy, 7k9k, 7kxj, 7kxk, 7l3n, 7ljr, 7q0a, 7rbu, 7swn, 7wef, 7wp1, 7wp6, 7x6a, 7zjl, 8d0z, 8dtk, 8gsb, 8iv8, 8iva – hscvSpi + antibody - Cryo EM

[[7mjj], 7mjl, 8gnh] – hscvSpi (mutant) + antibody - Cryo EM

2dd8, 2ghw, 3bgf, 6w41, 6xc2, 6xc3, 6xc4, 6xc7, 6xe1, 6xkp, 6xkq, 6zer, 7b3o, 7bwj, 7bz5, 7c01, 7cdi, 7cdj, 7ch4, 7ch5, 7chb, 7chc, 7che, 7chf, 7cho, 7chp, 7chs, 7cjf, 7d6i, 7djz, 7dk0, 7dk2, 7dpm, 7e3o, 7e5o, 7e5y, 7e7y, 7e86, 7e88, 7eam, 7ean, 7ejy, 7f6z, 7f7e, 7fcp, 7fcq, 7fjs, 7jmo, 7jmp, 7jmw, 7jx3, 7k9z, 7kmg, 7kn3, 7kn4, 7l5b, 7l7d, 7l7e, 7lm8, 7lm9, 7lop, 7lq7, 7m3i, 7m6d, 7m7w, 7mf1, 7msq, 7mzf, 7mzg, 7mzh, 7mzi, 7mzj, 7mzk, 7mzl, 7mzm, 7mzn, 7n3i, 7n4i, 7n4j, 7n4l, 7n4m, 7np1, 7nx6, 7nx8, 7nxa, 7nxb, 7or9, 7orb, 7pqy, ]]7pqz]], 7pr0, 7qez, 7qf0, 7qf1, 7r6w, 7r6x, 7r8l, 7rks, 7rku, 7s0b, 7s4s, 7s5p, 7s5q, 7s5r, 7s83, 7sbu, 7sd5, 7si2, 7t7b, 7te1, 7tp3, 7tp4, 7u2d, 7u2e, 7u8e, 7ul0, 7ul1, 7uzc, 7uzd, 7vmu, 7vn9, 7nyr, 7vzt, 7wbz, 7wn2, 7wnb, 7wqv, 7wph, 7wue, 7wvl, 7x2h, 7x7o, 7xei, 7xnf, 7xs8, 7xsa, 7xsc, 7y0c, 7y0v, 7yck, 7ycl, 7ycn, 7yh6, 7z0x, 7z0y, 8be1, 8cwi, 8cwk, 8dcc, 8dnn, 8dpz, 8dw9, 8dwa, 8dxt, 8dxu, 8edf, 8el2, 8eoo, 8f0i, 8gb6, 8hes, 8hn6, 8hn7, 8gb5, 8gb7, 8gb8, 8gf2, 8gx9, 8smt – hscvSpi RBD + antibody

6xdg, 6zdg, 6zfo, 7cah, 7cwo, 7e23, 7e39, 7e3b, 7e3c, 7k9i, 7m42, 7mkm, 7mlz, 7rr0, 7swo, 7swp, 7t01, 7tbf, 7tc9, 7the, 7v27, 7whz, 7wo7, 7wp1, 7wp2, 7wp8, 7wr8, 7wr9, 7wrj, 7wsc, 7x7t, 7x7v, 7xxl, 7y7k, 7yr0, 8a96, 8dw2, 8gjn, 8h7l, 8hed, 8idn, 8iv4, 8iv5, 8ix3, 8pq2 – hscvSpi RBD + antibody – Cryo EM

7e8m, 7ejz, 7ek0, 7f6y, 7fbk, 7nx7, 7nx9, 7ora – hscvSpi RBD (mutant) + antibody

7spo, 7spp – hscvSpi RBD + antibody-like

8dlz – hscvSpi + VH – Cryo EM

7olz, 8sk5 – hscvSpi RBD + VH

7mjh, 7mji – hscvSpi RBD (mutant) + VH – Cryo EM

8dm0 – hscvSpi NTD + VH – Cryo EM

7e7x, 7ly3 – hscvSpi NTD + antibody

7m8j, 7sww – hscvSpi NTD + antibody – Cryo EM

7e8f – hscvSpi NTD+RBD + antibody – Cryo EM

6zcz, 7kn6, 7kn7, 7x2k, 8cwv, 8elo, 8elp, 8elq – hscvSpi RBD + antibody + nanobody

7y0o – hscvSpi RBD + antibody + nanobody – Cryo EM

7dx4 – hscvSpi RBD + antibody + ACE2

8dw3 – hscvSpi RBD + antibody + darpin – Cryo EM

6zxn, 7lrs, 7vq0, 7z1a, 8cxq, 8cy6, 8cy7, 8cy9, 8cya, 8cyb, 8cyc, 8cyd, 8eyg, 8eyh, 8f4p – hscvSpi + nanobody - Cryo EM

7b14, 7b17, 7mdw, 7me7, 7mej, 7n9a, 7nll, 7xrp, 8cyj – hscvSpi RBD + nanobody - Cryo EM

7fat, 7fau, 7fbj, 7fh0, 7kgk, 7klw, 7km5, 7kn5, 7lx5, 7mfu, 7nkt, 7oao, 7oap, 7oaq, 7oau, 7oay, 7rby, 7w1s, 7wd1, 7wd2, 7x2j, 7x2l, 7x2m, 7z1b, 7z1c, 7z1d, 7z1e, 8cwu, 8h5t, 8h91, 8hr2 – hscvSpi RBD + nanobody

7jvb, 8cxn, 8h5u – hscvSpi + nanobody

7a25, 7a29, 7n0g, 7n0h, 7p77, 7p78, 7p79, 7p7a, 7p7b – hscvSpi + sybody - Cryo EM

7c8v, 7c8w, 7can, 7d2z, 7d30 – hscvSpi RBD + sybody

7rxd – hscvSpi RBD + legobody - Cryo EM

7yco – hscvSpi RBD + repebody

8h6f – hscvSpi + repebody – Cryo EM

7cyv, 7deo, 7det, 7deu, 7vnb, 8bec, 8bg1, 8bg2, 8bg3, 8bg4, 8bg5, 8dce, 8juh – hscvSpi RBD + scFV

7zce – hscvSpi + scFV – Cryo EM

5w41 – hsc2Spi RBD + antibody

7vng – hcv229Spi RBD + antibody

6pz8, 5w9h, 5w9i, 5w9j, 5w9k, 5w9l, 5w9m, 5w9n, 5w9o, 5w9p – McvSpi + antibody – Cryo EM

6j11 – McvSpi N-terminal + antibody

5yy5, 5zxv, 4zpt, 4zpv, 5do2, 6c6y, 6c6z, 4xak, 5gmq – McvSpi RBD + antibody

6war – McvSpi RBD + VH

6pci, 6qd8 – ZevSpi + antibody – Cryo EM

6lzg, 7dmu, 7fc3, 7fc5, 7fc6, 7lo4, 7rpv, 7w6u, 7xa7 – hscvSpi RBD + ACE2

7bh9, 7c8d, 7ddo, 7ddp, 7fdg, 7fdh, 7fdi, 7fdk, 7nxc, 7w8s, 7wse, 7wsf, 7wsg, 7zdq, 8hg0, 8t23, 8t25 – hscvSpi RBD + ACE2 – Cryo EM

7f5r, 7sn0 – hscvSpi RBD (mutant) + ACE2

7ydi, 8fxb, 8fxc – hscvSpi RBD + ACE2 + antibody – Cryo EM

7l0n – hscvSpi RBD + ACE2 + antibody

7ekh – hscvSpi RBD (mutant) + ACE2

7eke, 7mjn, 7p19, 7sxx, 7sxy, 7sxz, 7sy0, 7sy2, 7sy4, 7sy8, 8t20, 7wa1 – hscvSpi RBD (mutant) + ACE2 – Cryo EM

6acg, 6acj, 6ack, 6cs2, 7wsh, 8hfz – hscvSpi + ACE2 - Cryo EM

7mjk, 7mjm, 7sy1, 7sy3, 7sy5, 7sy6, 7sy7, 8t22, 8taz – hscvSpi (mutant) + ACE2 - Cryo EM

7y75, 7y76 – hscvSpi + ACE2 + SIT1 - Cryo EM

2ajf – hscvSpi RBD + ACEH

6m0j, 3d0g, 3d0h, 3d0i, 3sci, 3scj, 3sck, 3scl, 7e3j – hsc2Spi RBD + ACE2

3kbh – hcnSpi RBD + ACE2

7b62 – hscvSpi NTD + biliverdin

7x7n – hscvSpi + peptide - Cryo EM

7l4z, 8aaa – hscvSpi RBD + peptide -

8h3e – hscvSpi + modulator - Cryo EM

8j1q, 8j26 – hscvSpi RBD + DNA - Cryo EM

7c53 – hscvSpi HR1 + EK1

6u7f, 6u7g, 6u7e – hcv229Spi RBD + aminopeptidase

4kr0 – McvSpi RBD + CD26

4l72 – McvSpi RBD + DPP4

5zvk – McvSpi HR1 motif 984-1062 + peptide inhibitor

6uye – ZevSpi + SGP – Cryo EM

7ytn – hscvSpi + antibody

8gz5 – hsc2Spi RBD + VHH

8dlj – hsc2Spi + ACE2 – Cryo EM

7ekf – hsc2Spi RBD + ACE2

8dlk – hsc2Spi RBD + ACE2 – Cryo EM

7pry, 7prz, 7xeg – hscvSpi + antibody

7q0i – hscvSpi NTD + antibody

7fjc, 7ps0, 7ps1, 7ps2, 7ps4, 7ps5, 7ps6, 7ps7, 7q0g, 7q0h, 7x63, 7xil, 8bsf – hscvSpi RBD + antibody

8df5 – hscvSpi RBD + antibody + ACE2

8di5 – hscvSpi RBD + VH – Cryo EM

7vxd, 7vxf, 7vxk, 7vxm, 8dlm – hscvSpi + ACE2 – Cryo EM

8dln – hscvSpi RBD + ACE2 – Cryo EM

7ekg – hscvSpi RBD + ACE2

8dlr, 8dls – hscvSpi NTD + antibody – Cryo EM

8dlp – hscvSpi + ACE2 – Cryo EM

7ekc, 8dlq – hscvSpi RBD + ACE2 – Cryo EM

7wnm – hscvSpi RBD + ACE2

7urq, 7urs, 8bbn, 8i5h, 8i5i – hscvSpi RBD + antibody

7w9f, 7xdl, 7xdk – hscvSpi + antibody – Cryo EM

7wp0, 7wro, 7wry, 7x7u, 8bcz – hscvSpi RBD + antibody – Cryo EM

7x7d, 7x7e – hscvSpi RBD + nanobody

8c3v – hscvSpi RBD + nanobody + antibody

7tex – hsc2Spi + ACE2 – Cryo EM

7vpp, 7w9i, 7wbq – hsc2Spi RBD + ACE2

7tew – hsc2Spi RBD + ACE2 – Cryo EM

8dlx – hscvSpi + VH – Cryo EM

8dly – hscvSpi NTD + VH – Cryo EM

8dlw – hscvSpi + antibody - Cryo EM

8dlu – hscvSpi + ACE2 – Cryo EM

8dlv – hscvSpi RBD + ACE2 – Cryo EM

7tf0, 7vx9, 7vxa, 7vxb, 7vxc – hscvSpi + ACE2 – Cryo EM

7tez – hscvSpi RBD + ACE2 – Cryo EM

7we7, 7we8, 7we9, 7wea, 7wec, 7wi0, 7wk4, 7wk8, 7wka, 7ws6, 7xco, 7xdb, 8dm3, 8gzz, 8h3m, 8hc7, 8hc8 – hscvSpi + antibody - Cryo EM

7web, 7wed, 7wef, 7wk0, 7wlc, 7woc, [[7wog], 7won, 7wop, 7wrl, 7wrz, 7ws2, 7ws7, 7wsa, 7wtg, 7wth, 7wtj, 7xck, 7yd1, 8hc6 – hscvSpi RBD + antibody - Cryo EM

7x66, 7xik, 7y0w, 7zf3, 7zf5, 7zf8, 7zfa, 7zfd, 8sph – hscvSpi RBD + antibody

7zf4, 7zfb, 7zfc, 7zfe, 7zxu, 8bh5 – hscvSpi RBD + antibody + nanobody

8gpy – hscvSpi RBD + scFv

7zf9, 8e1g – hscvSpi + antibody

8h3n – hscvSpi (mutant) + antibody – Cryo EM

8dm4 – hscvSpi NTD + antibody – Cryo EM

7t9k, 7wbl, 7wk5, 7wk6, 7wrh, 7wvp, 7wvq, 7xch, 7y9z, 7ya0, 7yhw, 8dm5, 8dm7, 8dm9, 8hfx, 8ify, 8ifz – hscvSpi + ACE2 - Cryo EM

7t9l, 7yj3, 7yvu, 8dm6, 8dm8, 8gry, 8h06, 8hfy – hscvSpi RBD + ACE2 - Cryo EM

7xcp – hscvSpi + ACE2 + antibody - Cryo EM

7wsk, 7xb0, 7ya1 – hscvSpi + ACE2

7u0n, 7ufk, 7ufl, 7wbp, 7xaz, 7xb1, 7xby, 7xwa, 7zf7, 8asy, 8dma, 8h5c, 8if2, 8spi – hscvSpi RBD + ACE2

7tn0 – hscvSpi RBD + ACE2 + antibody

7sb5 – hscvSpi + antibody - Cryo EM

7sb3, 7sbv, 7sbw, 7sbx, 7sby – hscvSpi RBD + antibody - Cryo EM

7sb4 – hscvSpi RBD + ACE2 - Cryo EM

4h14 – Spi lectin domain 7-290 - bovine coronavirus

6b7n, 6bfu – pdcvSpi – porcine delta coronavirus – Cryo EM

6u7k, 6vv5 – Spi – porcine epidemic diarrhea virus – Cryo EM

6qfy – Spi lectin domain 15-300 - porcine hemagglutinating encephalomyelitis virus
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6jhy – Spi N-terminal – camel coronavirus HKU23

6jx7 – Spi – feline infectious peritonitis virus – Cryo EM

1wdf, 1wdg – mhvSpi – murine hepatitis virus

3jcl – mhvSpi – Cryo EM

6b3o – Spi residues 718-1252 - murine coronavirus - Cryo EM

6zgf – bcvSpi - bat coronavirus – Cryo EM

5gyq – bcvSpi RBD

5xgr – bcvSpi C-terminal

7ttm, 7tty, 8j5j – bcvSpi RBD + antibody

7p8i, 7p8j – bcvSpi RBD + ACE2

7xsw – Spi RBD + antibody - pangolin

6orj – Spi - Pseudomonas virus phikz164i

2vvd, 2vve – Spi RBD - Pseudoalteromonas phage PM2

3aqj – Spi 87-211 - Enterobacteria phage P2

[8a05j]] – Spi penton domain 1-91 - Flavobacteria phage FL-1

4fsc – Spi RBD + aminopeptidase – porcine respiratory coronavirus

7vpq – pdcvSpi RBD + aminopeptidase

6vsj – mcvSpi + MHV-R - Cryo EM

4qzv – bcvSpi RBD + DPP4

4f2m – Spi 481-650 + antibody – gastroenteritis virus