Synaptotagmin 3D structures

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Updated on 11-December-2023

Synaptotagmin-1; domains: toxin-binding 33-53; C2A 141-268; C2B 267-446

3f00, 3f01, 3f04, 3f05 – hSYT1 C2A domain – human

2k45 – hSYT1 C2A domain - NMR

7u4q – hSYT1 C2A domain (mutant)

6tz3 – hSYT1 C2B domain

6u41, 6u4u, 6u4w, 7tua, 7tx9 – hSYT1 C2B domain (mutant)

2r83 – hSYT1 C2A+C2B domains

5t0r, 5vfe – mSYT1 C2A domain – mouse

5vff, 5vfg, 5t0s – mSYT1 C2B domain

1rsy, 4wee, 6cxw – rSYT1 C2A domain – rat

1k5w, 1byn – rSYT1 C2A domain - NMR

1tjx, 1tjm, 1uov, 1uow – rSYT1 C2B domain

5ccj – rSYT1 C2B domain (mutant)

8faf – oSYT1 C2A domain - octopus

8fam – oSYT1 C2A domain (mutant)

7as6, 7atp – SYT1 C2A domain - Arabidopsis thaliana

7a1r – SYT1 C2A domain – Trypanosoma brucei

Synaptotagmin-1 complex

2lha – hSYT1 C2B domain + inositol hexaphosphate - NMR

4v11 – hSYT1 C2B domain + synaptic vesicle glycoprotein peptide

2k4a – hSYT1 C2A domain + heparin-binding growth factor - NMR

2ki6 – hSYT1 C2A domain + heparin-binding growth factor + protein S100 A13

4isq, 6g5f, 6g5k, 6qns – hSYT1 toxin-binding domain + botulinum neurotoxin B2-binding domain

6zvn – hSYT1 C2B domain + botulinum neurotoxin B2-binding domain

2n1t – hSYT1 C2B domain + VAMP-2 + syntaxin-1A + SNAP-25

8c5h – rSYT1 C2A domain + nanobody

2yoa – rSYT1 C2B domain + phosphoserine

5w5d, 5w5c – rSYT1 C2B domain + VAMP-2 + syntaxin-1A + SNAP-25 + complexin-1

5cch, 5ccg, 5kj7, 5cci, 5kj8 – rSYT1 C2A+C2B domains + VAMP-2 + syntaxin-1A + SNAP-25

6mti – rSYT1 C2A+C2B domains + VAMP-2 + syntaxin-1A + SNAP-25 – Cryo EM

Synaptotagmin-2

4npk, 4npj – hSYT2 C2A+C2B domains 363-662

4p42 – hSYT2 SMP+C2A+C2B domains 191-662

6g5g – hSYT2 toxin-binding domain + botulinum neurotoxin B2-binding domain

2np0, 4kbb – mSYT2 ectodomain 1-60 + botulinum neurotoxin B

4isr – rSYT2 toxin-binding domain + botulinum neurotoxin DC heavy chain

2nm1 – rSYT2 toxin-binding domain + botulinum neurotoxin B receptor-binding domain

Synaptotagmin-3

3hn8 – rSYT3 C2A+C2B domains 293-588

1dqv – rSYT3 C2A+C2B domains - NMR

Synaptotagmin-4

1ugk – hSYT4 C2A domain - NMR

1w15, 1w16 – rSYT4 C2B domain

Synaptotagmin-5

5h4y – hSYT5 C2A domain

5h4z – hSYT5 C2A domain (mutant)

Synaptotagmin-7

2d8k – hSYT7 C2A domain - NMR

6anj – rSYT7 C2A domain

6ank – rSYT7 C2A+C2B domains

3n5a – mSYT7 C2B domain 266-403

Synaptotagmin-13

1wfm – hSYT13 C2A domain - NMR

Synaptotagmin-like protein 2

3bc1 – hSYTL2 Rab-binding domain

7opp, 7opq, 7opr – hSYTL2 + Rab 27A

Synaptotagmin-like protein 4

5x6t – hSYTL4 N-terminal Zn finger - NMR

2csz – hSYTL4 RING domain - NMR

3fdw – hSYTL4 C2 domain

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Michal Harel, Joel L. Sussman

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Synaptotagmin 3D structures

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