User:Eric Martz/Virus capsid visualization resources

From Proteopedia

Virus Capsids in Proteopedia

Articles marked have 300 or more words, 4 or more green links and 4 or more literature citations. marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.

• Adeno-Associated Virus 3D printed models
• Canine parvovirus capsid
• Cowpea Chlorotic Mottle Virus capsid
• Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
• Gag of HIV-1
• Gag polyprotein, part of the capsid of HIV and other retroviruses.
• Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
• Rhinovirus, human
• Norovirus oligosaccaride binding
• Polio virus capsid
• SV40 Capsid Simplified overlays the capsid with its geometric icosahedron.
• Tobacco Mosaic Virus
• Viral capsids ***
• Virus coat protein
• Zika virus -- Art
• Zika virus capsid protein

*** Needs further examination.

Lists of Links

• HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
• Virus coat proteins 3D structures

External Virus Capsid Resources

• Molecule of the Month at the RCSB PDB offers:
  • 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
  • Adenovirus Capsid has long fibers extending from its vertices.
  • HIV Capsid.
  • HPV: Human Papillomavirus and Vaccines.
  • Paper models of viruses can be constructed using instructions provided.
  • Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.

• VIPERdb / VIrus Particle ExploreR database includes:
  • Static images of virus capsids organized by taxa.

• The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also Browse by Virion.

Notes

• User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
• User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.