User:Michael Strong/H1N1/NS2/MSA

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H1N1 Swine Flu Multiple Sequence Alignment of NS2 Protein, 53 sequences

NS2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 64-116, 94% sequence identity to pdp template 1pd3

Drag the structure with the mouse to rotate
Protein Polymorphism Strain with Polymorphism Number of Strains with Polymorphism
NS2 E63K 229783374_A/Korea/01/2009 1
NS2 E67K 229598887_A/Texas/15/2009 1
NS2 A89E 228017754_A/California/06/2 3
NS2 A115T 229892755_A/Canada-NS/RV153 1 

gi|229299513_A/Texas/05/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229368685_A/Denmark/513/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227831790_A/Texas/05/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229299533_A/Texas/04/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977168_A/California/07/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977144_A/California/07/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977112_A/California/04/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227809840_A/California/04/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977156_A/California/08/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977124_A/California/08/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396499_A/Ohio/07/2009         MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536008_A/Kansas/03/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396476_A/New_York/19/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396461_A/Texas/06/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396401_A/New_York/31/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396412_A/New_York/23/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396386_A/New_York/18/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396448_A/New_York/15/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396350_A/New_York/12/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396372_A/New_York/11/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396432_A/New_York/10/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396362_A/New_York/06/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484057_A/Mexico/InDRE448      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484060_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484055_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462704_A/Valencia/GP4/20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462716_A/Pais_Vasco/GP20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462728_A/Castilla-La_Man      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462692_A/Castilla-La_Man      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535810_A/Texas/09/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535992_A/South_Carolina/      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536032_A/Minnesota/02/20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536116_A/Michigan/02/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535828_A/California/14/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536017_A/Arizona/01/2009      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783408_A/New_York/1682/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783387_A/New_York/1669/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892757_A/Mexico/InDRE411      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892760_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892769_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892766_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892763_A/Canada-AB/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511857_A/Mexico/4604/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511866_A/Mexico/4603/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511860_A/Mexico/4486/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511872_A/Mexico/4115/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511869_A/Mexico/4108/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783374_A/Korea/01/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892755_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229598887_A/Texas/15/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|228017754_A/California/06/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536106_A/Nebraska/02/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237624336_A/swine/Alberta/O      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
                                    **************************************************

gi|229299513_A/Texas/05/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229368685_A/Denmark/513/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227831790_A/Texas/05/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229299533_A/Texas/04/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977168_A/California/07/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977144_A/California/07/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977112_A/California/04/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227809840_A/California/04/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977156_A/California/08/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977124_A/California/08/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396499_A/Ohio/07/2009         RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536008_A/Kansas/03/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396476_A/New_York/19/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396461_A/Texas/06/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396401_A/New_York/31/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396412_A/New_York/23/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396386_A/New_York/18/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396448_A/New_York/15/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396350_A/New_York/12/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396372_A/New_York/11/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396432_A/New_York/10/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396362_A/New_York/06/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484057_A/Mexico/InDRE448      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484060_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484055_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462704_A/Valencia/GP4/20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462716_A/Pais_Vasco/GP20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462728_A/Castilla-La_Man      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462692_A/Castilla-La_Man      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535810_A/Texas/09/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535992_A/South_Carolina/      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536032_A/Minnesota/02/20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536116_A/Michigan/02/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535828_A/California/14/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536017_A/Arizona/01/2009      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783408_A/New_York/1682/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783387_A/New_York/1669/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892757_A/Mexico/InDRE411      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892760_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892769_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892766_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892763_A/Canada-AB/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511857_A/Mexico/4604/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511866_A/Mexico/4603/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511860_A/Mexico/4486/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511872_A/Mexico/4115/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511869_A/Mexico/4108/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783374_A/Korea/01/2009        RMGDLHYLQSRNKKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892755_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229598887_A/Texas/15/2009        RMGDLHYLQSRNEKWRKQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|228017754_A/California/06/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
gi|229536106_A/Nebraska/02/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
gi|237624336_A/swine/Alberta/O      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
                                    ************:***:********************* ***********

gi|229299513_A/Texas/05/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229368685_A/Denmark/513/200      QALQLLLEVEQEIRAFS---- 117
gi|227831790_A/Texas/05/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229299533_A/Texas/04/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|227977168_A/California/07/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977144_A/California/07/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977112_A/California/04/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227809840_A/California/04/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977156_A/California/08/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977124_A/California/08/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229396499_A/Ohio/07/2009         QALQLLLEVEQEIRAFSFQLI 121
gi|229536008_A/Kansas/03/2009       QALQLLLEVEQEIRAFSFQLI 121
gi|229396476_A/New_York/19/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396461_A/Texas/06/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229396401_A/New_York/31/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396412_A/New_York/23/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396386_A/New_York/18/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396448_A/New_York/15/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396350_A/New_York/12/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396372_A/New_York/11/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396432_A/New_York/10/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396362_A/New_York/06/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229484057_A/Mexico/InDRE448      QALQLLLEVEQEIRAFSFQLI 121
gi|229484060_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229484055_A/Canada-NS/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|229462704_A/Valencia/GP4/20      QALQLLLEVEQEIRAFSFQLI 121
gi|229462716_A/Pais_Vasco/GP20      QALQLLLEVEQEIRAFSFQLI 121
gi|229462728_A/Castilla-La_Man      QALQLLLEVEQEIRAFSFQLI 121
gi|229462692_A/Castilla-La_Man      QALQLLLEVEQEIRAFSFQLI 121
gi|229535810_A/Texas/09/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229535992_A/South_Carolina/      QALQLLLEVEQEIRAFSFQLI 121
gi|229536032_A/Minnesota/02/20      QALQLLLEVEQEIRAFSFQLI 121
gi|229536116_A/Michigan/02/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229535828_A/California/14/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229536017_A/Arizona/01/2009      QALQLLLEVEQEIRAFSFQLI 121
gi|229783408_A/New_York/1682/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229783387_A/New_York/1669/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229892757_A/Mexico/InDRE411      QALQLLLEVEQEIRAFSFQLI 121
gi|229892760_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229892769_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229892766_A/Canada-NS/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|229892763_A/Canada-AB/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|237511857_A/Mexico/4604/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511866_A/Mexico/4603/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511860_A/Mexico/4486/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511872_A/Mexico/4115/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511869_A/Mexico/4108/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229783374_A/Korea/01/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229892755_A/Canada-NS/RV153      QALQLLLEVEQEIRTFSFQLI 121
gi|229598887_A/Texas/15/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|228017754_A/California/06/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229536106_A/Nebraska/02/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237624336_A/swine/Alberta/O      QALQLLLEVEQEIRAFSFQLI 121
                                    **************:**

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Michael Strong

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