User:Wayne Decatur/Sandbox TestCompareinScriptAuthoring

From Proteopedia

New attempts after new Jmol version AND STARTING WITH CLEAN, NEW MULTI-MODEL SCENE to run compare and save resulting compared version as a Protopedioa scene using Scene Authoring Tools. On LepA page, loaded 'LepA/Lepaefgbothh/1' scene and entered compare command in console: Result of test:
It reported the rmsd and superimposed. However, the the page locked up and I couldn't save the scene.
The same script works great pasted into the console of a popup from the scene authoring window. Scripts tested include below and one built into this page, both failed: model all; compare {1.1} {1.2} ROTATE TRANSLATE;

UPDATE: FAKE GREEN SCENE LINK BELOW SEEMS TO NOW WORK WITH NEW JMOL IN PROTEOPEDIA. HOORAY!!!

Testing compare running dynamically in Proteopedia with new Jmol version

Compare runs and doesn't lock up using the development version here
The code is below:

define domain1model1 94-139:a and model=1.1;
define domain1model2 100-143:a and model=1.2;
define domain2model1 236-273:a and model=1.1;
define domain2model2 354-388:a and model=1.2;
define domain3model1 324-342:a and model=1.1;
define domain3model2 438-470:a and model=1.2;
define domain5model1 432-438:a and model=1.1;
define domain5model2 634-641:a and model=1.2;
origcoord = {1.1}.xyz.all;
compare {1.1} {1.2} ATOMS {domain1model1}{domain1model2},{domain2model1}{domain2model2},{domain3model1}{domain3model2},{domain5model1}{domain5model2} ROTATE TRANSLATE -2.5; 

 
You can even paste in the code below to see the two models go back apart smoothly:

rotate COMPARE {1.1} @origcoord -2.5;