User:Wayne Decatur/Sandboxds

From Proteopedia

1atu morphed to 1ezx

Jmol._Canvas2D (Jmol) "jmolApplet1"[x] loadScript /wiki/extensions/jsmol/j2s/core/package.js loadScript /wiki/extensions/jsmol/j2s/core/corejmol.z.js loadScript /wiki/extensions/jsmol/j2s/J/translation/PO.js loadScript /wiki/extensions/jsmol/j2s/core/corescript.z.js JSmol exec jmolApplet1 start applet null Jmol JavaScript applet jmolApplet1__637053011495675__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet1__637053011495675__) vwrOptions: { "name":"jmolApplet1","applet":true,"documentBase":"https://proteopedia.org/wiki/index.php/User:Wayne_Decatur/Sandboxds","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__637053011495675__","codePath":"https:/wiki/extensions/jsmol/j2s/","display":"jmolApplet1_canvas2d","loadStructCallback":"manageLoadStructCallback","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"637053011495675","messageCallback":"msgCb","bgcolor":"white" } setting document base to "https://proteopedia.org/wiki/index.php/User:Wayne_Decatur/Sandboxds" (C) 2015 Jmol Development Jmol Version: 14.31.8 2020-09-26 10:04 java.vendor: Java2Script (HTML5) java.version: 2019-06-08 00:17:46 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet1 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor white backgroundColor = "white" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback manageLoadStructCallback LOADSTRUCTCallback = "manageLoadStructCallback" StatusManager callback set for LOADSTRUCTCallback f=manageLoadStructCallback cb=LOADSTRUCT Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback msgCb MESSAGECallback = "msgCb" StatusManager callback set for MESSAGECallback f=msgCb cb=MESSAGE Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue doTranslate null Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet() Note -- language translation disabled Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet1__637053011495675__ ready script 1 started pdbGetHeader = true FileManager opening url https://proteopedia.org/wiki/extensions/Proteopedia/spt/functions.spt?1733933141 loadScript /wiki/extensions/jsmol/j2s/core/coretext.z.js Loading, please wait ... platformSpeed = 8 FileManager opening url https://proteopedia.org/wiki/scripts/User:Wayne_Decatur/Sandboxdsallmodels/Ds_intialview/1.spt loadScript /wiki/extensions/jsmol/j2s/J/thread/MoveToThread.js spinqualitylabelsall models PDB ID 1atu1ezxwd.pdb Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

1atu1ezxwd.pdb (1atu1ezxwd.pdb), resolution XXXÅ (initial scene).

Click here to initiate the animation showing morph with all models using 8 mb pdb file from Daniel Seeman.
All I did was use find and replace to edit file you sent earlier. It did take sometime after I uploaded it and got the upload details page for it to actually be available to scene authoring tools. Default colors are from Jmol. I woud suggest coloring and representing as you want and make your own scene.