2pyp

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(New page: 200px<br /><applet load="2pyp" size="450" color="white" frame="true" align="right" spinBox="true" caption="2pyp, resolution 1.9&Aring;" /> '''PHOTOACTIVE YELLOW PR...)
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[[Image:2pyp.jpg|left|200px]]<br /><applet load="2pyp" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2pyp, resolution 1.9&Aring;" />
 
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'''PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED'''<br />
 
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==Overview==
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==PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED==
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The blue-light photoreceptor photoactive yellow protein (PYP) undergoes a, self-contained light cycle. The atomic structure of the bleached signaling, intermediate in the light cycle of PYP was determined by millisecond, time-resolved, multiwavelength Laue crystallography and simultaneous, optical spectroscopy. Light-induced trans-to-cis isomerization of the, 4-hydroxycinnamyl chromophore and coupled protein rearrangements produce a, new set of active-site hydrogen bonds. An arginine gateway opens, allowing, solvent exposure and protonation of the chromophore's phenolic oxygen., Resulting changes in shape, hydrogen bonding, and electrostatic potential, at the protein surface form a likely basis for signal transduction. The, structural results suggest a general framework for the interpretation of, protein photocycles.
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<StructureSection load='2pyp' size='340' side='right'caption='[[2pyp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2pyp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PYP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=60F:(2~{R})-2-AZANYL-3-[(~{E})-3-(4-HYDROXYPHENYL)PROP-2-ENOYL]SULFANYL-PROPANOIC+ACID'>60F</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyp OCA], [https://pdbe.org/2pyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pyp RCSB], [https://www.ebi.ac.uk/pdbsum/2pyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pyp ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pyp ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The blue-light photoreceptor photoactive yellow protein (PYP) undergoes a self-contained light cycle. The atomic structure of the bleached signaling intermediate in the light cycle of PYP was determined by millisecond time-resolved, multiwavelength Laue crystallography and simultaneous optical spectroscopy. Light-induced trans-to-cis isomerization of the 4-hydroxycinnamyl chromophore and coupled protein rearrangements produce a new set of active-site hydrogen bonds. An arginine gateway opens, allowing solvent exposure and protonation of the chromophore's phenolic oxygen. Resulting changes in shape, hydrogen bonding, and electrostatic potential at the protein surface form a likely basis for signal transduction. The structural results suggest a general framework for the interpretation of protein photocycles.
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==About this Structure==
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Structure of a protein photocycle intermediate by millisecond time-resolved crystallography.,Genick UK, Borgstahl GE, Ng K, Ren Z, Pradervand C, Burke PM, Srajer V, Teng TY, Schildkamp W, McRee DE, Moffat K, Getzoff ED Science. 1997 Mar 7;275(5305):1471-5. PMID:9045611<ref>PMID:9045611</ref>
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2PYP is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila] with HC4 as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2PYP OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure of a protein photocycle intermediate by millisecond time-resolved crystallography., Genick UK, Borgstahl GE, Ng K, Ren Z, Pradervand C, Burke PM, Srajer V, Teng TY, Schildkamp W, McRee DE, Moffat K, Getzoff ED, Science. 1997 Mar 7;275(5305):1471-5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9045611 9045611]
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</div>
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<div class="pdbe-citations 2pyp" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Halorhodospira halophila]]
[[Category: Halorhodospira halophila]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Borgstahl, G.E.O.]]
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[[Category: Borgstahl GEO]]
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[[Category: Burke, P.]]
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[[Category: Burke P]]
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[[Category: Genick, U.K.]]
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[[Category: Genick UK]]
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[[Category: Getzoff, E.D.]]
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[[Category: Getzoff ED]]
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[[Category: Mcree, D.E.]]
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[[Category: Mcree DE]]
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[[Category: Moffat, K.]]
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[[Category: Moffat K]]
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[[Category: Ng, K.]]
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[[Category: Ng K]]
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[[Category: Pradervand, C.]]
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[[Category: Pradervand C]]
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[[Category: Ren, Z.]]
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[[Category: Ren Z]]
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[[Category: Schildkamp, W.]]
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[[Category: Schildkamp W]]
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[[Category: Srajer, V.]]
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[[Category: Srajer V]]
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[[Category: Teng, T.]]
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[[Category: Teng T]]
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[[Category: HC4]]
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[[Category: chromophore]]
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[[Category: light sensor for phototaxis]]
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[[Category: photoreceptor]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 13:44:17 2007''
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Current revision

PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED

PDB ID 2pyp

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