2rjb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:30, 17 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2rjb' size='340' side='right'caption='[[2rjb]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='2rjb' size='340' side='right'caption='[[2rjb]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2rjb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"shigella_paradysenteriae"_weldin_1927 "shigella paradysenteriae" weldin 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RJB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2rjb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RJB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">S1487, SF1787 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjb OCA], [https://pdbe.org/2rjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rjb RCSB], [https://www.ebi.ac.uk/pdbsum/2rjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rjb ProSAT], [https://www.topsan.org/Proteins/NESGC/2rjb TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjb OCA], [https://pdbe.org/2rjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rjb RCSB], [https://www.ebi.ac.uk/pdbsum/2rjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rjb ProSAT], [https://www.topsan.org/Proteins/NESGC/2rjb TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HGLS_SHIFL HGLS_SHIFL] Catalyzes the decarboxylation and hydroxylation of 2-oxoadipate (2OA) to form D-2-hydroxyglutarate (D-2-HGA).[UniProtKB:Q88CC1]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/2rjb_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/2rjb_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Shigella paradysenteriae weldin 1927]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Shigella flexneri]]
-
[[Category: Baran, M C]]
+
[[Category: Acton TB]]
-
[[Category: Chen, Y]]
+
[[Category: Baran MC]]
-
[[Category: Cunningham, K]]
+
[[Category: Chen Y]]
-
[[Category: Fang, Y]]
+
[[Category: Cunningham K]]
-
[[Category: Hunt, J F]]
+
[[Category: Fang Y]]
-
[[Category: Liu, J]]
+
[[Category: Hunt JF]]
-
[[Category: Ma, L C]]
+
[[Category: Liu J]]
-
[[Category: Montelione, G T]]
+
[[Category: Ma L-C]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Rost, B]]
+
[[Category: Rost B]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Wang, D]]
+
[[Category: Wang D]]
-
[[Category: Xia, R]]
+
[[Category: Xia R]]
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Uncharacterized protein]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of uncharacterized protein YdcJ (SF1787) from Shigella flexneri which includes domain DUF1338. Northeast Structural Genomics Consortium target SfR276

PDB ID 2rjb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://proteopedia.org/wiki/index.php/2rjb"
Personal tools