exit;
# BEGINOFOPTIONS
# Options for the scene
# caption: Structure of the covalent enzyme intermediate. The active site residue Asp 52 and the carbohydrate are shown in CPK colors, with the 2FO-FC electron density within 1.5 A of these atoms as blue mesh. The backbone trace is shown in gold.
# spinState: on
# doModelReload: true
# savePSpeed: -1
# killMove: 1
# killZoom: 1
# animationDirection: 0
# animationMode: PALINDROME
# loopPause: 1
# ENDOFOPTIONS

# Jmol state version 14.29.16  2018-06-03 23:13;
# fullName = "jmolApplet0__911286323807633__";
# documentBase = "http://proteopedia.org/wiki/index.php?title=Hen_Egg-White_(HEW)_Lysozyme&action=edit";
# codeBase = "http:/wiki/extensions/jsmol/j2s/";

function _setWindowState() {
# width 350;
# height 350;
  stateVersion = 1429016;
  background [xffffff];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  set ambientPercent 45;
  set diffusePercent 84;
  set specular true;
  set specularPercent 22;
  set specularPower 40;
  set specularExponent 6;
  set celShading false;
  set celShadingPower 10;
  set zShadePower 3;
}

function _setFileState() {
  set allowEmbeddedScripts false;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set autoBond true;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0 0 0};
  set defaultLoadFilter "";
  set defaultLoadScript "";
  set defaultStructureDssp true;
  set defaultVDW Auto;
  set forceAutoBond false;
# set defaultDirectory "";
# set loadFormat "https://files.rcsb.org/download/%FILE.pdb";
# set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif";
# set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true";
# set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE";
# set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
  set bondingVersion 0;
  set legacyAutoBonding false;
  set legacyAutoBonding false;
  set legacyHAddition false;
  set legacyJavaFloat false;
  set minBondDistance 0.4;
  set minimizationCriterion  0.001;
  set minimizationSteps  100;
  set multipleBondBananas false;
  set pdbAddHydrogens false;
  set pdbGetHeader false;
  set pdbSequential false;
  set percentVdwAtom 23;
  set smallMoleculeMaxAtoms 40000;
  set smartAromatic true;
  reloadfile = false;
    load /*file*/"/cgi-bin/getfrozenstructure?932c10afc4e1e94cdeab12d300cbb47b";
  reloadfile = true;
}

function _setParameterState() {
   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlabelpdb "%m%r";
   set defaultlabelxyz "%a";
   set defaultlattice "{0 0 0}";
   set defaultloadfilter "";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowmoveatoms false;
  set allowrotateselected false;
  set animationmode "once";
  set appletproxy "";
  set applysymmetrytobonds false;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set axes window;
  set axesmode 0;
  set axesoffset 0.0;
  set axesscale 2.0;
  set bondmodeor false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonbaseedges false;
  set cartoonblockheight 0.5;
  set cartoonblocks false;
  set cartoonfancy false;
  set cartoonladders false;
  set cartoonrockets false;
  set cartoonsfancy false;
  set cartoonsteps false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set defaultstructuredssp true;
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotscale 1;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawfontsize 14.0;
  set drawhover false;
  set dsspcalculatehydrogenalways true;
  set ellipsoidarcs false;
  set ellipsoidarrows false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set energyunits "kJ";
  set forceautobond false;
  set gestureswipefactor 1.0;
  set greyscalerendering false;
  set hbondsbackbone false;
  set hbondsrasmol true;
  set hbondssolid false;
  set helixstep 1;
  set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hiddenlinesdashed false;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set hoverdelay 0.5;
  set infofontsize 20;
  set isosurfacekey false;
  set isosurfacepropertysmoothing true;
  set isosurfacepropertysmoothingpower 7;
  set jmolinjspecview true;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set measureallmodels false;
  set measurementlabels true;
  set meshscale 1;
  set messagestylechime false;
  set minbonddistance 0.4;
  set minimizationcriterion 0.001;
  set minimizationrefresh true;
  set minimizationsilent false;
  set minimizationsteps 100;
  set minpixelselradius 6;
  set modulationscale 1.0;
  set monitorenergy false;
  set multiplebondbananas false;
  set multiplebondradiusfactor 0.0;
  set multiplebondspacing -1.0;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set nbocharges true;
  set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile=";
  set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile=";
  set partialdots false;
  set particleradius 20.0;
  set pdbaddhydrogens false;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 23;
  set pickingspinrate 10;
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showmeasurements true;
  set showmodulationvectors false;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set showunitcelldetails true;
  set slabbyatom false;
  set slabbymolecule false;
  set smallmoleculemaxatoms 40000;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone true;
  set starwidth 0.05;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set strutdefaultradius 0.3;
  set strutlengthmaximum 7.0;
  set strutsmultiple false;
  set strutspacing 6;
  set tracealpha true;
  set translucent true;
  set twistedsheets false;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vectorscentered false;
  set vectorsymmetry false;
  set vectortrail 0;
  set vibrationscale 1.0;
  set waitformoveto true;
  set wireframerotation false;
  set zdepth 0;
  set zoomheight false;
  set zoomlarge true;
  set zslab 50;
# user-defined atom sets; 
  @~anomalous_atoms ({});
  @~backbone_invisible ({});
  @~hydroxy_unchained_nucs ({});
  @~nobackbone_aas ({});
  @~nophosphorus_nucs ({});
  @~protein ({0:1010});
  @~unbondable_aas ({});
  @~unchained_aas ({});
  @~unchained_nucs ({});
}

function _setModelState() {
  calculate hbonds;
  select all;
  wireframe off;
  spacefill off;
  dots off;
  backbone off;
  trace off;
  ribbon off;
  cartoon off;
  strands off;
  rocket off;
  meshribbon off;
  isosurface off;
  halos off;
  color cpk;
  hbonds off;
data "connect_atoms"
16	301	4096	0.0	-2.517	hbond;
57	30	10240	0.0	-2.468	hbond;
65	34	10240	0.0	-2.096	hbond;
70	45	10240	0.0	-2.287	hbond;
75	51	10240	0.0	-1.935	hbond;
80	60	10240	0.0	-2.771	hbond;
88	68	10240	0.0	-2.192	hbond;
97	73	10240	0.0	-2.312	hbond;
108	78	10240	0.0	-1.784	hbond;
118	91	8192	0.0	-1.697	hbond;
122	83	12288	0.0	-2.519	hbond;
138	176	16384	0.0	-1.26	hbond;
146	125	8192	0.0	-2.152	hbond;
169	141	8192	0.0	-2.406	hbond;
173	149	8192	0.0	-1.743	hbond;
203	188	8192	0.0	-1.486	hbond;
211	188	10240	0.0	-1.007	hbond;
225	194	10240	0.0	-2.27	hbond;
232	202	10240	0.0	-2.628	hbond;
238	206	10240	0.0	-2.052	hbond;
243	214	10240	0.0	-2.278	hbond;
248	228	10240	0.0	-2.485	hbond;
257	235	10240	0.0	-2.091	hbond;
268	241	10240	0.0	-1.602	hbond;
284	246	10240	0.0	-2.126	hbond;
290	251	10240	0.0	-1.583	hbond;
290	246	12288	0.0	-0.713	hbond;
298	246	4096	0.0	-1.212	hbond;
309	287	8192	0.0	-1.349	hbond;
317	3	4096	0.0	-2.967	hbond;
333	312	8192	0.0	-1.514	hbond;
345	410	4096	0.0	-1.759	hbond;
364	397	16384	0.0	-2.808	hbond;
390	367	8192	0.0	-1.937	hbond;
407	348	4096	0.0	-2.782	hbond;
415	459	4096	0.0	-1.975	hbond;
427	336	4096	0.0	-2.892	hbond;
447	430	8192	0.0	-0.951	hbond;
456	418	12288	0.0	-2.039	hbond;
472	403	4096	0.0	-2.197	hbond;
489	467	8192	0.0	-0.88	hbond;
503	467	10240	0.0	-2.022	hbond;
523	622	4096	0.0	-2.742	hbond;
572	557	8192	0.0	-1.658	hbond;
578	481	4096	0.0	-2.357	hbond;
597	492	4096	0.0	-2.816	hbond;
605	506	4096	0.0	-1.638	hbond;
611	592	8192	0.0	-1.595	hbond;
634	526	4096	0.0	-2.637	hbond;
646	630	8192	0.0	-1.669	hbond;
651	637	8192	0.0	-1.634	hbond;
659	643	8192	0.0	-1.855	hbond;
667	649	8192	0.0	-0.824	hbond;
713	690	10240	0.0	-2.714	hbond;
720	698	10240	0.0	-2.698	hbond;
728	705	10240	0.0	-2.222	hbond;
734	710	10240	0.0	-2.63	hbond;
739	716	10240	0.0	-2.424	hbond;
748	723	10240	0.0	-1.446	hbond;
757	731	10240	0.0	-1.929	hbond;
765	737	10240	0.0	-2.713	hbond;
772	742	10240	0.0	-0.722	hbond;
778	760	8192	0.0	-1.602	hbond;
810	793	8192	0.0	-1.783	hbond;
818	801	8192	0.0	-1.315	hbond;
823	805	8192	0.0	-1.979	hbond;
863	826	10240	0.0	-2.214	hbond;
874	840	10240	0.0	-2.156	hbond;
882	847	10240	0.0	-1.802	hbond;
893	852	10240	0.0	-2.335	hbond;
899	852	12288	0.0	-3.16	hbond;
912	896	8192	0.0	-2.175	hbond;
927	915	6144	0.0	-2.195	hbond;
943	922	8192	0.0	-1.279	hbond;
948	930	8192	0.0	-1.898	hbond;
962	937	8192	0.0	-2.088	hbond;
970	946	8192	0.0	-1.042	hbond;
985	965	8192	0.0	-1.705	hbond;
end "connect_atoms";
  select ({0:407 409 410 415:1010});
  color atoms opaque chain;
  select ({0:1241});
  Spacefill 0;
  select BONDS ({0 1 6 9});
  color bonds opaque [xffff30];
  select BONDS ({0:11 38:453 461:1147});
  wireframe 0;
  select BONDS ({12:37 454:460});
  wireframe 0.4;
  Backbone ({0:1001});
  Backbone 0.2;
  Backbone ({1002:1010});
  Backbone 0.0;
  select ({0:1010});
  color Backbone opaque [xffd700];
  isosurface ID "s_one" select ({0:1241})  color [x6495ed] sigma -1.0 /*file*/"http://proteopedia.org/wiki/images/b/b3/1h6m.jvxl";
  isosurface ID "s_one" noFill mesh noDots notFrontOnly frontlit;
  color isosurface opaque [x6495ed];
  hover "%U";
  frank on;
  font frank 16 SansSerif Plain;
  select *;
  set fontScaling false;
}

function _setPerspectiveState() {
  if (reloadfile) {   set perspectiveModel 11; }
  set scaleAngstromsPerInch 0;
  set perspectiveDepth true;
  set visualRange 5;
  set cameraDepth 3;
  boundbox corners {-20.722 1.043999999999997 -3.3659999999999997} {19.887 41.269 41.587} # volume = 73430.591764825;
  if (reloadfile) {   center {6.174519999999999 24.04584 25.138840000000002}; }
# removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {-0.4175000000000004 21.156499999999998 19.110500000000002} 31.329855192862485 {0 0 0} 0 0 0 3.0 0.0 0.0;
# removed save orientation "default";
  slab 100;depth 0;
  set slabRange 0.0;
  set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20;
  spin axisangle {0.0 1.0 0.0} 10.0;
}

function _setSelectionState() {
  select ({0:1241});
  set hideNotSelected false;
}

function _setState() {
# # initialize;
# update caption
 ppdiaCaptionCmd = "changeCaption('Structure of the covalent enzyme intermediate. The active site residue Asp 52 and the carbohydrate are shown in CPK colors, with the 2FO-FC electron density within 1.5 A of these atoms as blue mesh. The backbone trace is shown in gold.');";
  javascript @ppdiaCaptionCmd;
  
  select all;
  labels off;
  measurements off;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setParameterState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing false;
  SelectionHalos OFF;
  delay 1.0;
    moveto 1.0 { 4 -996 -85 151.34} 615.28 0.0 0.0 {6.174519999999999 24.04584 25.138840000000002} 40.46755187629986 {0 0 0} 0 0 0 3.0 0.0 0.0;; 

  set refreshing true;
  if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false };
  set antialiasTranslucent true;
  set antialiasImages true;
  spin on;
}
_setState;