exit; # Jmol state version 14.6.0_2016.06.22 2016-06-22 13:08; # fullName = "jmolApplet0__941718566418438__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=CRISPR-Cas9&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1406000; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "http://files.rcsb.org/view/%FILE.pdb"; # set loadLigandFormat "http://www.rcsb.org/pdb/files/ligand/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; # set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.omap"; # set edsUrlFormatDiff "http://eds.bmc.uu.se/eds/dfs/\ufffd\ufffd/%file/%file_diff.omap"; # set edsUrlCutoff "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.sfdat"; set bondingVersion 0; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; load /*file*/"/cgi-bin/getfrozenstructure?e44061e874ac35d8806b45eaf9f9ebaf"; reloadfile = true; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set backbonesteps false; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsfancy false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set edsurlformatdiff "http://eds.bmc.uu.se/eds/dfs/\ufffd\ufffd/%file/%file_diff.omap"; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels false; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({9646:9664 11045:11058}); @~protein ({0:9645}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13 SansSerif Plain; } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({11122 11126 11127 11129 11131 11132 11134 11137 11139:11142 11146 11147 11149 11151 11152 11154 11157 11159:11162 11166 11167 11169 11171 11172 11174 11177 11179:11182 11186 11187 11189 11191 11192 11194 11197 11199 11200}); color atoms opaque [xff00ff]; select ({11045 11047 11049 11050 11052 11055 11057:11059 11063 11064 11066 11068 11069 11071 11073 11074 11077 11079 11080 11084 11085 11087 11089 11090 11092 11095 11097:11100 11104 11105 11107 11109 11110 11112 11114 11115 11118 11121}); color atoms opaque [xff0000]; select ({1071 1079 1080 1282 1290 1291 1302 1309 4763 4771 4795 4803 11133 11136 11153 11156 11173 11176 11193 11196 11198}); Spacefill 0.4625; select ({1074 1083 1285 1294 1305 1307 1312 1314 4766 4798 11123:11125 11128 11130 11135 11138 11143:11145 11148 11150 11155 11158 11163:11165 11168 11170 11175 11178 11183:11185 11188 11190 11195}); Spacefill 0.425; select ({1072 1073 1075:1078 1081 1082 1084 1283 1284 1286:1289 1292 1293 1295:1301 1303 1304 1306 1308 1310 1311 1313 1315 4764 4765 4767:4770 4796 4797 4799:4802}); color atoms opaque [x00ffff]; select ({9646:10473}); color atoms opaque [x00ff00]; select ({4895 4896 4898:4900}); color atoms translucent 0.875 [xff00ff]; select ({10474:11044}); color atoms opaque [xffa500]; select ({0:1070 1085:1281 1316:4762 4772:4794 4804:11121}); Spacefill 0; select ({1 2 4:6 10 11 14 15 17:23 25 26 28 30 32 33 35 36 40 41 43:46 48 49 51:57 60 61 63:65 69 70 72:74 76 77 79 82 83 85:88 91 92 94 96 98 99 101:104 106 107 109:111 113 117 118 120:126 128 129 131:133 137 138 140:143 145 146 148:151 153 154 156:158 160 161 163:165 169 170 173 174 176:179 182 183 185 187 189 190 192:195 197 198 200:203 206 207 209 210 212 213 216 217 219:222 224 225 227:229 233 234 236:238 242 243 245:247 251 252 255 256 258:264 266 267 269:272 274 275 277:279 283 284 286:288 292 293 295 296 300 301 303:306 309 310 312 314 315 317:319 321 325 326 328 329 333 334 336 337 341 342 344 345 347 348 351 352 354:360 363 364 366:369 372 373 375:377 381 382 384:387 389 390 392:395 398 399 401:403 405 406 408:411 413 414 416:419 421 422 424 425 429 430 432:434 436 440 441 443:446 448 449 451:457 460 461 463:466 469 470 472 474 476 477 479:485 488 489 491 493 494 496 497 501 502 504:506 510 511 513 516 517 519:522 524 525 527:529 533 534 536:539 541 542 544:546 548 549 551:553 557 558 560:563 565 566 568 569 573 574 576:579 581:585 587 588 590:592 596 597 599 600 604 605 607:610 612 613 615 618 619 621 623 624 626 628 629 631:634 636 637 639 640 644 645 647 650 651 653:659 662 663 665:667 669 673 674 676:679 682 683 685:687 691 692 694:697 700 701 703 705 707 708 710:712 716 717 719:721 725 726 728 730 732 733 735:737 739 743 744 746 747 751 752 754 756 757 759:762 764 765 767:770 772 773 775:777 781 782 784:786 790 791 793:795 799 800 802 804 805 807 809 811 812 814:820 823 824 826:828 830 834 835 837 838 842 843 845 847 848 850:853 855 856 858 859 861 862 865 866 868 869 873 874 876:882 885 886 888:894 896 897 899:902 904 905 908 909 911:913 915 919 920 922 924 926 927 929 930 934 935 937 938 942 943 945:948 950 951 953 955 957 958 960 961 965 966 968 970 971 973:976 978 979 981 982 986 987 989:992 995 996 998 1000 1001 1003 1004 1006 1007 1010 1011 1013 1015 1016 1018:1020 1024 1025 1027:1030 1032 1033 1035:1041 1044 1045 1047 1049 1050 1053 1054 1056:1059 1061 1062 1064:1070 1086 1087 1089:1091 1095 1096 1098:1101 1103 1104 1106:1112 1114 1115 1117 1118 1122 1123 1126 1127 1129:1132 1135 1136 1138:1140 1142 1143 1145:1148 1150 1151 1153 1155 1156 1158:1160 1164 1165 1167:1170 1172 1173 1176 1177 1179 1181 1183 1184 1186 1188 1190 1191 1193:1195 1199 1200 1202 1203 1205 1206 1209 1210 1212:1214 1218 1219 1221 1222 1226 1227 1229 1231 1232 1234:1237 1239 1240 1242:1245 1247 1248 1250:1252 1254 1258 1259 1261 1264 1265 1267:1273 1275 1276 1278 1279 1317 1318 1320:1326 1329 1330 1332:1338 1340 1341 1343 1346 1347 1350 1351 1353:1359 1361 1362 1364:1370 1373 1374 1376:1378 1382 1383 1385 1386 1390 1391 1393:1395 1397 1401 1402 1404:1407 1410 1411 1413 1414 1418 1419 1421:1423 1425 1426 1428:1434 1436 1437 1439 1442 1443 1445 1447 1448 1450:1452 1456 1457 1459 1460 1464 1465 1467:1470 1472 1473 1475 1478 1479 1481 1483 1485 1486 1488 1490 1491 1493:1496 1498 1499 1501:1503 1505 1506 1508 1509 1511 1512 1515 1516 1518:1520 1522 1526 1527 1529:1532 1534 1535 1537:1539 1541 1542 1544:1546 1550 1551 1553 1554 1558 1559 1561 1562 1566 1567 1569:1575 1577 1578 1580:1582 1584 1585 1587:1590 1593 1594 1596:1602 1604 1605 1607:1610 1613 1614 1616:1618 1622 1623 1625 1626 1630 1631 1633 1636 1637 1639 1640 1642 1643 1646 1647 1649:1652 1654 1655 1657:1663 1665 1666 1668 1670 1672 1673 1675:1677 1679 1683 1684 1686:1689 1691 1692 1694:1697 1699 1700 1702 1704 1706 1707 1709 1711 1712 1714:1716 1718 1719 1721:1723 1725 1726 1728 1731 1732 1734:1737 1739 1740 1742:1744 1746 1750 1751 1753:1755 1759 1760 1762 1763 1765 1766 1769 1770 1772:1778 1780 1781 1783:1785 1789 1790 1792 1793 1797 1798 1800:1802 1804 1805 1807:1810 1813 1814 1816:1819 1822 1823 1825 1827 1828 1830:1833 1835 1836 1839 1840 1842:1845 1847 1848 1850:1856 1858 1859 1861:1863 1865 1866 1868 1871 1872 1874 1876 1878 1879 1881 1884 1885 1887:1890 1892 1893 1895:1897 1901 1902 1904:1906 1910 1911 1913:1915 1917 1918 1920:1926 1928 1929 1931 1934 1935 1937:1943 1945 1946 1948:1950 1952 1953 1955:1961 1963 1964 1966:1972 1975 1976 1978 1979 1983 1984 1986:1988 1992 1993 1995:1998 2000 2001 2003:2006 2008 2009 2011 2013 2015 2016 2018:2020 2024 2025 2027 2029 2031 2032 2034:2036 2040 2041 2043:2046 2048 2049 2051 2052 2056 2057 2059:2062 2064 2065 2067:2073 2076 2077 2079 2080 2084 2085 2087:2089 2093 2094 2096:2099 2101 2102 2104:2107 2109 2110 2113 2114 2117 2118 2120:2123 2125 2126 2128 2131 2132 2134:2136 2138 2142 2143 2145:2147 2151 2152 2154 2156 2157 2160 2161 2163 2165 2167 2168 2170:2172 2176 2177 2179:2182 2185 2186 2188:2191 2193 2194 2196:2199 2202 2203 2206 2207 2209:2212 2214 2215 2217 2218 2222 2223 2225:2227 2231 2232 2234:2236 2238 2239 2241:2244 2246 2247 2249 2250 2254 2255 2257:2260 2262 2263 2265 2267 2268 2270:2273 2275 2276 2278:2280 2284 2285 2287:2290 2293 2294 2296 2297 2301 2302 2304 2305 2309 2310 2312:2314 2318 2319 2321 2323 2325 2326 2328 2330 2331 2333 2334 2336 2337 2340 2341 2343:2346 2348 2349 2351:2354 2356 2357 2359 2361 2362 2364 2367 2368 2370:2373 2375 2376 2378:2380 2382 2383 2385 2386 2388 2389 2392 2393 2395:2397 2399 2403 2404 2406:2412 2414 2415 2417:2420 2422 2423 2425:2427 2429 2430 2432:2435 2437 2438 2440:2446 2448 2449 2451:2454 2457 2458 2460:2462 2466 2467 2469:2472 2474 2475 2477:2480 2482 2483 2485 2488 2489 2491 2492 2496 2497 2499:2501 2503 2507 2508 2510 2511 2515 2516 2518 2520 2522 2523 2525:2528 2530 2531 2533 2536 2537 2539:2545 2547 2548 2550:2553 2555 2556 2558:2561 2563 2564 2566:2568 2572 2573 2575:2577 2581 2582 2584:2590 2592 2593 2595:2598 2601 2602 2604 2607 2608 2610 2611 2615 2616 2618:2620 2624 2625 2627:2629 2633 2634 2636:2638 2640 2641 2643:2646 2648 2649 2651 2653 2654 2656 2659 2660 2662:2668 2670 2671 2673 2676 2677 2679:2682 2685 2686 2688:2694 2697 2698 2700:2703 2706 2707 2709 2711 2713 2714 2716:2719 2721 2722 2724:2727 2729 2730 2732:2734 2736 2740 2741 2743 2744 2748 2749 2751:2753 2757 2758 2760 2761 2765 2766 2768:2770 2772 2773 2775:2778 2780 2781 2783 2785 2786 2788 2790 2792 2793 2795 2797 2798 2800:2802 2806 2807 2809 2811 2812 2814:2817 2819 2820 2822:2828 2830 2831 2833 2834 2838 2839 2841:2843 2847 2848 2850:2853 2855 2856 2858 2859 2863 2864 2866 2869 2870 2872:2875 2877 2878 2880 2881 2885 2886 2888:2891 2893 2894 2896 2898 2900 2901 2903 2904 2906 2907 2910 2911 2913:2916 2918 2919 2921:2927 2929 2930 2932:2935 2937 2938 2940 2943 2944 2946 2947 2949 2950 2953 2954 2956:2959 2962 2963 2965:2968 2971 2972 2974:2977 2979 2980 2982:2984 2988 2989 2991 2993 2995 2996 2998:3001 3003 3004 3006 3009 3010 3012 3015 3016 3018 3020 3021 3023:3026 3028 3029 3031 3034 3035 3037 3038 3042 3043 3045 3046 3048 3049 3052 3053 3055:3058 3060:3064 3066 3067 3069 3070 3074 3075 3077 3079 3081 3082 3084:3087 3089 3090 3092:3094 3096 3100 3101 3103 3104 3108 3109 3111 3113 3114 3116:3119 3121 3122 3124:3130 3133 3134 3136:3138 3142 3143 3145:3147 3149 3153 3154 3156:3158 3160 3164 3165 3167:3170 3172 3173 3175 3178 3179 3181:3183 3187 3188 3190:3193 3195 3196 3198 3200 3202 3203 3206 3207 3209 3211 3212 3214:3217 3219 3220 3222 3224 3226 3227 3229:3232 3235 3236 3238 3241 3242 3244 3246 3247 3249:3252 3255 3256 3258:3260 3264 3265 3267:3270 3273 3274 3276:3278 3280 3281 3283:3285 3289 3290 3292:3294 3296 3300 3301 3303 3306 3307 3309:3312 3314 3315 3317:3320 3323 3324 3326 3327 3329 3330 3333 3334 3336:3338 3342 3343 3345 3346 3350 3351 3353:3356 3358 3359 3361 3362 3366 3367 3369:3372 3374 3375 3377:3379 3383 3384 3386:3388 3392 3393 3395:3398 3400 3401 3403:3406 3408 3409 3411 3414 3415 3417 3419 3420 3422 3424 3425 3428 3429 3431:3434 3437 3438 3440:3442 3446 3447 3449:3452 3454 3455 3457 3460 3461 3463:3465 3469 3470 3472 3474 3475 3477:3483 3485 3486 3488:3491 3494 3495 3497:3499 3503 3504 3506:3509 3512 3513 3515 3517 3519 3520 3522 3525 3526 3528:3530 3534 3535 3537:3540 3542 3543 3545:3548 3550 3551 3553 3556 3557 3559 3560 3562 3563 3566 3567 3569 3571 3572 3574 3575 3577 3578 3581 3582 3584 3586 3587 3589 3591 3592 3594:3597 3599 3600 3602 3603 3607 3608 3610:3612 3616 3617 3619:3621 3623 3624 3626:3629 3631 3632 3634:3636 3638 3639 3641 3643 3645 3646 3648 3650 3652 3653 3655:3658 3660 3661 3663 3665 3666 3668:3671 3674 3675 3677:3679 3683 3684 3686 3688 3689 3691:3693 3697 3698 3700:3703 3706 3707 3709:3711 3715 3716 3718:3721 3723 3724 3726:3729 3731 3732 3734:3737 3740 3741 3743 3746 3747 3749:3751 3755 3756 3758:3761 3763 3764 3766 3767 3771 3772 3774 3777 3778 3780:3783 3785 3786 3788:3791 3793 3794 3797 3798 3800:3803 3805 3806 3808:3814 3817 3818 3820 3821 3823 3824 3827 3828 3830:3833 3835 3836 3838:3841 3843 3844 3846 3847 3851 3852 3854:3857 3859:3863 3865 3866 3868:3874 3876 3877 3879 3881 3882 3884:3886 3888 3889 3891 3893 3894 3896 3898 3899 3901 3904 3905 3907 3908 3912 3913 3915:3917 3921 3922 3924:3926 3928 3929 3931 3932 3936 3937 3939:3941 3943 3944 3946 3948 3949 3951:3957 3959 3960 3962 3965 3966 3968 3970 3971 3973:3975 3977 3981 3982 3984:3987 3989 3990 3992 3994 3996 3997 4000 4001 4003:4006 4008 4009 4011:4014 4017 4018 4020:4023 4025 4026 4028:4030 4034 4035 4037 4038 4040 4042 4043 4045:4047 4051 4052 4054:4056 4058 4059 4061 4064 4065 4067:4070 4072 4073 4075 4078 4079 4081:4087 4089 4090 4092:4098 4101 4102 4104 4105 4109 4110 4112:4115 4118 4119 4121 4123 4124 4126:4128 4130 4134 4135 4137 4138 4142 4143 4145:4151 4154 4155 4157 4159 4160 4162 4164 4166 4167 4169:4172 4175 4176 4178:4181 4184 4185 4187:4189 4191 4192 4194:4200 4203 4204 4206 4209 4210 4212:4214 4216 4217 4219:4221 4225 4226 4228:4231 4234 4235 4237:4243 4245 4246 4248:4251 4254 4255 4257:4260 4262 4263 4265 4266 4270 4271 4273:4279 4281 4282 4284:4286 4290 4291 4293 4294 4296 4298 4299 4301:4303 4305 4306 4308 4310 4312 4313 4315:4318 4320 4321 4323 4325 4326 4328 4331 4332 4335 4336 4338:4341 4343:4347 4349 4350 4352 4353 4357 4358 4360:4362 4364 4365 4367 4368 4372 4373 4375:4378 4381 4382 4384:4386 4390 4391 4393:4396 4399 4400 4402 4403 4407 4408 4410 4411 4415 4416 4419 4420 4422 4424 4425 4427:4430 4432 4433 4435:4438 4440 4441 4443:4449 4451 4452 4454:4456 4458 4459 4461:4464 4467 4468 4470 4471 4475 4476 4479 4480 4482:4485 4487 4488 4490:4496 4499 4500 4502:4508 4511 4512 4514:4517 4519 4520 4523 4524 4526:4529 4531 4532 4534 4535 4537 4539 4540 4542:4544 4546 4547 4549:4552 4555 4556 4558:4560 4564 4565 4567:4570 4572 4573 4575 4578 4579 4581:4587 4589 4590 4592:4594 4598 4599 4601:4603 4605 4606 4608 4610 4612 4613 4615:4617 4621 4622 4624 4626 4627 4629 4631 4633 4634 4636 4639 4640 4642:4644 4648 4649 4652 4653 4655:4661 4663 4664 4666 4667 4671 4672 4674 4676 4677 4679 4680 4682 4684 4685 4687:4693 4696 4697 4699:4705 4708 4709 4711 4712 4716 4717 4719:4725 4728 4729 4731:4737 4739 4740 4742:4744 4746 4747 4749 4750 4754 4755 4757 4759 4760 4762 4773 4774 4776 4777 4779 4781 4782 4784:4787 4789 4790 4792:4794 4805 4806 4808 4811 4812 4814 4817 4818 4820 4822 4824 4825 4827:4829 4833 4834 4836:4839 4841 4842 4844:4847 4850 4851 4853 4855 4856 4858:4860 4862 4863 4865 4867 4869 4870 4872 4874 4875 4877 4878 4880 4881 4884 4885 4887:4893 4904 4905 4907 4909 4911 4912 4914 4915 4917 4918 4921 4922 4924 4926 4928 4929 4931 4933 4935 4936 4938:4940 4942 4943 4945:4948 4950 4951 4953:4956 4958 4959 4961:4964 4966 4967 4969 4972 4973 4975 4976 4980 4981 4983 4984 4988 4989 4991:4997 4999 5000 5002:5005 5007 5008 5010:5012 5016 5017 5019:5021 5023 5024 5026:5029 5031 5032 5034:5036 5040 5041 5043:5046 5048 5049 5051 5053 5055 5056 5058:5061 5064 5065 5067:5069 5073 5074 5076:5079 5081 5082 5084:5090 5093 5094 5096 5097 5101 5102 5104:5107 5109 5110 5112 5113 5117 5118 5120 5121 5125 5126 5128:5130 5132 5133 5135 5137 5138 5140 5142 5143 5145 5147 5148 5150:5152 5154 5155 5157 5159 5160 5162 5164 5165 5167:5173 5175 5176 5178:5180 5184 5185 5187 5189 5191 5192 5194 5196 5197 5199:5205 5208 5209 5211 5213 5214 5216:5219 5222 5223 5225:5228 5231 5232 5234 5236 5238 5239 5242 5243 5245 5246 5250 5251 5253:5255 5259 5260 5262 5264 5265 5268 5269 5271:5277 5280 5281 5283:5285 5287 5291 5292 5294:5296 5300 5301 5303 5305 5306 5308:5311 5313 5314 5316 5319 5320 5322:5325 5328 5329 5331:5334 5336:5340 5342 5343 5345:5348 5350 5351 5353 5354 5358 5359 5361:5367 5369 5370 5372 5374 5376 5377 5379:5381 5383 5387 5388 5390 5391 5395 5396 5398:5404 5406 5407 5409:5412 5414 5415 5417 5420 5421 5423:5426 5429 5430 5432:5438 5441 5442 5444 5446 5448 5449 5451:5454 5457 5458 5460 5462 5464 5465 5467 5469 5471 5472 5474 5477 5478 5480:5483 5485 5486 5488 5489 5493 5494 5496:5499 5501 5502 5504 5507 5508 5510 5513 5514 5516:5519 5521 5522 5524:5526 5528 5532 5533 5535:5537 5539 5540 5542 5545 5546 5548 5551 5552 5554:5556 5560 5561 5563:5569 5572 5573 5575:5578 5581 5582 5584 5585 5589 5590 5592:5595 5597 5598 5601 5602 5604:5606 5610 5611 5613:5619 5622 5623 5625:5631 5634 5635 5637 5639 5640 5642:5644 5648 5649 5651:5654 5656 5657 5659 5660 5664 5665 5667:5669 5671 5672 5674:5677 5679 5680 5682:5685 5687 5688 5690:5696 5699 5700 5702 5703 5705 5706 5709 5710 5712:5715 5717 5718 5720 5723 5724 5726:5732 5734 5735 5737:5739 5743 5744 5746:5748 5750 5754 5755 5757:5760 5762 5763 5765 5767 5768 5770:5772 5776 5777 5779 5781 5782 5784:5786 5790 5791 5793:5796 5798 5799 5801 5802 5804 5806 5807 5809 5810 5814 5815 5817 5819 5820 5822:5824 5826 5827 5829:5831 5835 5836 5838 5840 5842 5843 5846 5847 5849:5852 5855 5856 5858:5861 5863 5864 5866:5872 5875 5876 5878:5881 5883 5884 5886:5892 5894 5895 5897:5899 5903 5904 5906:5909 5911 5912 5914:5920 5923 5924 5926 5927 5931 5932 5934:5937 5940 5941 5943 5944 5948 5949 5951:5957 5959 5960 5962 5964 5965 5967 5969 5970 5973 5974 5976 5977 5979 5980 5983 5984 5986 5987 5989 5990 5993 5994 5997 5998 6000:6003 6006 6007 6009:6011 6013 6014 6016 6017 6021 6022 6024:6027 6029 6030 6032 6033 6035 6036 6039 6040 6042 6044 6046 6047 6049:6052 6054 6055 6057:6063 6066 6067 6069:6072 6074:6078 6080 6081 6083 6085 6087 6088 6091 6092 6094:6097 6099 6100 6102:6108 6110 6111 6113 6116 6117 6119:6121 6123 6124 6126:6128 6132 6133 6135 6136 6140 6141 6143:6146 6148 6149 6151 6153 6154 6156:6159 6162 6163 6165 6167 6169 6170 6172 6175 6176 6178:6181 6183 6184 6186:6189 6192 6193 6195:6198 6200 6201 6203 6204 6208 6209 6212 6213 6215:6217 6221 6222 6224 6226 6227 6229:6231 6235 6236 6238:6241 6243 6244 6246:6252 6254 6255 6257:6263 6266 6267 6269:6271 6273 6277 6278 6280:6282 6284 6285 6287 6289 6290 6292 6295 6296 6298:6301 6303 6304 6306:6309 6311 6312 6314:6317 6320 6321 6323 6325 6326 6328:6330 6332 6336 6337 6339:6341 6343 6347 6348 6350:6356 6358 6359 6361 6363 6365 6366 6368 6371 6372 6374 6375 6379 6380 6382:6385 6388 6389 6391:6397 6399 6400 6402:6408 6410 6411 6413:6419 6421 6422 6424 6425 6427 6428 6431 6432 6434:6436 6438 6439 6441:6443 6445 6446 6448:6451 6453 6454 6456 6458 6460 6461 6463:6466 6468 6469 6471 6472 6476 6477 6479:6485 6488 6489 6491:6493 6497 6498 6500 6502 6503 6505 6507 6508 6510 6511 6515 6516 6518 6521 6522 6524:6526 6528 6529 6531 6534 6535 6537:6540 6543 6544 6546:6552 6554 6555 6557 6558 6562 6563 6565:6567 6571 6572 6574:6576 6578 6582 6583 6585:6587 6589 6590 6592 6593 6597 6598 6600 6602 6603 6605:6611 6614 6615 6617:6620 6622 6623 6625:6628 6631 6632 6634:6636 6640 6641 6643 6644 6646 6647 6650 6651 6653:6655 6657 6658 6660:6662 6666 6667 6669 6671 6673 6674 6676:6678 6680 6681 6683:6686 6688 6689 6691:6694 6696 6697 6700 6701 6703:6706 6708 6709 6711 6712 6716 6717 6719 6721 6722 6725 6726 6728:6730 6734 6735 6737 6739 6740 6742 6743 6747 6748 6750:6753 6755 6756 6758:6761 6763 6764 6766:6772 6775 6776 6778:6781 6783 6784 6786 6788 6790 6791 6793:6795 6797 6798 6800:6803 6805 6806 6808 6809 6813 6814 6816 6819 6820 6822 6824 6826 6827 6830 6831 6833 6835 6836 6838:6841 6843 6844 6846:6849 6851 6852 6854:6856 6860 6861 6863:6865 6869 6870 6872:6874 6876 6880 6881 6883 6886 6887 6889:6892 6894 6895 6897 6898 6902 6903 6905 6907 6909 6910 6912:6915 6917 6918 6920:6922 6926 6927 6929 6931 6932 6934:6940 6942 6943 6945 6946 6950 6951 6953:6959 6962 6963 6965:6967 6971 6972 6974 6976 6977 6979:6982 6985 6986 6988:6991 6993 6994 6996 6997 7001 7002 7004 7005 7009 7010 7012:7014 7016 7020 7021 7023:7025 7029 7030 7032:7035 7038 7039 7041:7043 7047 7048 7050:7052 7054 7058 7059 7061:7063 7065 7066 7068 7070 7071 7073 7075 7076 7078:7080 7082 7086 7087 7089:7091 7095 7096 7098 7100 7101 7103:7106 7108:7112 7114 7115 7117 7120 7121 7123:7125 7127 7128 7130:7132 7134 7135 7138 7139 7141 7143 7145 7146 7148:7151 7153 7154 7156:7159 7162 7163 7165 7166 7170 7171 7173:7176 7178 7179 7181:7184 7187 7188 7190:7192 7196 7197 7200 7201 7203:7209 7212 7213 7215:7218 7220 7221 7223 7226 7227 7229:7231 7235 7236 7238:7240 7242 7243 7245:7248 7250 7251 7253 7254 7256 7257 7260 7261 7263:7265 7269 7270 7272:7275 7277 7278 7280:7282 7284 7285 7287 7288 7292 7293 7295:7298 7300 7301 7303 7304 7306 7308 7309 7311:7314 7316 7317 7319 7320 7322 7323 7326 7327 7329:7335 7338 7339 7341:7343 7347 7348 7350 7352 7353 7355:7357 7359 7360 7362:7364 7366 7367 7369:7371 7373 7374 7376:7379 7381 7382 7384 7386 7387 7389 7390 7394 7395 7397:7400 7402 7403 7405:7407 7411 7412 7414 7416 7417 7419 7421 7422 7424:7426 7428 7429 7431:7437 7440 7441 7443:7445 7449 7450 7452:7454 7458 7459 7461:7467 7469 7470 7472:7474 7478 7479 7481:7484 7487 7488 7490 7491 7493 7495 7496 7498:7501 7503 7504 7506:7509 7511 7512 7514 7515 7519 7520 7522:7525 7528 7529 7531:7534 7536 7537 7539 7540 7544 7545 7547 7550 7551 7553:7556 7558 7559 7561:7563 7565 7566 7568:7571 7573 7574 7576:7579 7582 7583 7585 7586 7590 7591 7593:7599 7602 7603 7605:7607 7609 7610 7612 7614 7615 7617 7619 7620 7622 7624 7625 7627:7629 7631 7632 7635 7636 7639 7640 7642:7644 7646 7647 7649:7652 7654 7655 7657 7658 7662 7663 7665:7667 7669 7670 7672:7678 7681 7682 7684:7686 7690 7691 7693:7696 7698 7699 7701 7703 7705 7706 7708 7709 7713 7714 7716:7718 7722 7723 7725:7731 7733 7734 7736 7738 7740 7741 7743 7746 7747 7749:7755 7757 7758 7760 7762 7763 7765:7768 7771 7772 7774 7775 7777 7779 7780 7783 7784 7786 7788 7790 7791 7793:7795 7799 7800 7802 7805 7806 7809 7810 7812:7818 7820 7821 7823:7826 7828 7829 7831:7837 7839 7840 7842:7848 7851 7852 7854:7856 7858 7859 7861:7863 7865 7866 7868 7870 7871 7873:7875 7877 7878 7880:7886 7889 7890 7892 7894 7896 7897 7899 7902 7903 7905:7908 7911 7912 7914:7917 7919 7920 7922 7923 7927 7928 7930:7932 7934 7935 7937:7940 7942 7943 7945 7947 7949 7950 7953 7954 7956:7962 7964 7965 7967:7969 7971 7972 7974 7975 7979 7980 7982:7984 7986 7987 7989:7995 7997 7998 8000:8002 8004 8005 8007:8010 8012:8016 8018 8019 8021:8024 8027 8028 8030 8032 8034 8035 8037:8040 8042 8043 8045 8047 8048 8050 8051 8055 8056 8058 8059 8061 8062 8065 8066 8068:8070 8074 8075 8077 8080 8081 8083:8085 8087 8091 8092 8094 8096 8097 8099 8100 8102 8103 8106 8107 8109:8115 8117 8118 8120:8123 8125 8126 8128:8130 8134 8135 8138 8139 8141:8147 8149 8150 8152 8153 8157 8158 8160:8166 8168 8169 8171:8174 8176 8177 8179 8180 8182 8183 8186 8187 8189:8195 8198 8199 8201 8202 8206 8207 8209:8211 8213 8214 8216 8218 8219 8221 8223 8225 8226 8229 8230 8232 8233 8237 8238 8240:8246 8248 8249 8251:8254 8256 8257 8259:8262 8264 8265 8267 8268 8270 8271 8274 8275 8277:8283 8285 8286 8288:8291 8294 8295 8297 8298 8300 8302 8303 8305 8306 8310 8311 8313:8315 8317 8321 8322 8324 8325 8329 8330 8332:8335 8337 8338 8340 8343 8344 8346:8352 8354 8355 8357:8359 8363 8364 8366:8368 8370 8374 8375 8378 8379 8381:8384 8386 8387 8389:8391 8393 8394 8397 8398 8400:8406 8408 8409 8411 8412 8414 8416 8417 8419:8421 8423 8424 8426 8428 8429 8431:8433 8437 8438 8440:8443 8446 8447 8449 8450 8454 8455 8457:8459 8463 8464 8466 8468 8470 8471 8473:8475 8479 8480 8482:8488 8490 8491 8493 8494 8498 8499 8501 8503 8504 8506 8508 8509 8512 8513 8515 8517 8519 8520 8522:8524 8526 8527 8529:8535 8537 8538 8540:8543 8545 8546 8548 8550 8551 8554 8555 8557:8560 8563 8564 8566:8568 8570 8574 8575 8577:8580 8582 8583 8585:8591 8594 8595 8597:8599 8601 8605 8606 8608 8609 8613 8614 8616:8619 8621 8622 8624:8630 8633 8634 8636:8638 8640 8641 8643 8645 8646 8648 8649 8653 8654 8656:8658 8662 8663 8665:8668 8670 8671 8673:8676 8678 8679 8681 8683 8684 8686:8689 8691 8692 8694:8697 8699 8700 8702:8704 8708 8709 8711:8713 8717 8718 8720:8723 8726 8727 8730 8731 8733:8736 8738 8739 8741:8743 8745 8746 8748:8754 8756 8757 8759:8761 8763 8767 8768 8770 8771 8775 8776 8779 8780 8782 8785 8786 8788 8789 8793 8794 8796:8799 8801 8802 8804:8807 8809 8810 8812:8814 8816 8817 8819:8822 8825 8826 8828:8831 8833 8834 8836:8839 8841 8842 8844 8846 8847 8849 8850 8854 8855 8857 8858 8862 8863 8865 8866 8870 8871 8873 8876 8877 8879 8880 8882 8883 8886 8887 8889 8891 8892 8894:8897 8899 8900 8902 8903 8907 8908 8910 8912 8914 8915 8917 8918 8920 8922 8923 8925:8927 8929 8930 8932 8934 8935 8937:8940 8942 8943 8945:8948 8950 8951 8953:8955 8957 8961 8962 8964 8967 8968 8970:8972 8974 8975 8977:8980 8982 8983 8985:8987 8991 8992 8994 8995 8997 8999 9000 9002:9004 9006 9010 9011 9013 9014 9018 9019 9021 9024 9025 9027 9028 9032 9033 9035 9037 9038 9040 9042 9043 9045 9047 9049 9050 9053 9054 9056:9058 9062 9063 9065 9066 9070 9071 9073:9079 9082 9083 9085:9088 9090 9091 9093 9094 9098 9099 9101 9104 9105 9107:9109 9111 9112 9114:9116 9118 9119 9121:9123 9125 9129 9130 9132 9133 9137 9138 9140:9143 9145 9146 9148 9149 9153 9154 9157 9158 9160:9162 9164 9165 9167 9170 9171 9173:9179 9181 9182 9184 9185 9189 9190 9192 9195 9196 9198:9200 9202 9206 9207 9209:9215 9217 9218 9220:9222 9226 9227 9229 9230 9234 9235 9237:9239 9241 9242 9244:9246 9250 9251 9253:9256 9258:9262 9264 9265 9267:9269 9271 9272 9274 9275 9277 9279 9280 9282 9283 9287 9288 9290 9292 9293 9295 9296 9300 9301 9303 9305 9306 9308 9309 9313 9314 9317 9318 9320 9322 9323 9325:9331 9334 9335 9337 9338 9340 9341 9344 9345 9347:9350 9352 9353 9355 9357 9358 9360:9363 9365 9366 9368 9370 9371 9374 9375 9377:9379 9383 9384 9386:9389 9391 9392 9394:9397 9399 9400 9402:9405 9407 9408 9410 9411 9415 9416 9418 9419 9421 9422 9425 9426 9428:9431 9433 9434 9436:9439 9442 9443 9445:9447 9451 9452 9454 9457 9458 9460 9462 9463 9465 9466 9470 9471 9473:9476 9478 9479 9481:9484 9487 9488 9490:9493 9495 9496 9498:9500 9504 9505 9507 9508 9512 9513 9516 9517 9519:9522 9524 9525 9527 9530 9531 9533 9534 9538 9539 9541:9543 9547 9548 9550 9551 9555 9556 9558:9561 9563:9567 9569 9570 9572:9575 9577 9578 9580 9582 9583 9585:9591 9594 9595 9597:9600 9602 9603 9605:9607 9611 9612 9614:9616 9620 9621 9623:9626 9628 9629 9631:9633 9635 9639 9640 9642 9643}); color atoms translucent 0.875 [x00ffff]; select ({1072 1073 1075:1078 1081 1082 1084 1283 1284 1286:1289 1292 1293 1295:1301 1303 1304 1306 1308 1310 1311 1313 1315 4764 4765 4767:4770 4796 4797 4799:4802 11126 11127 11129 11131 11132 11134 11137 11139:11141 11146 11147 11149 11151 11152 11154 11157 11159:11161 11166 11167 11169 11171 11172 11174 11177 11179:11181 11186 11187 11189 11191 11192 11194 11197 11199 11200}); Spacefill 0.4875; select ({11122 11142 11162 11182}); Spacefill 0.52; select BONDS ({1092:1104 1305:1338 4862 4864:4870 4895 4896 4898:4903 11513:11598}); wireframe 0.36; select BONDS ({0:1091 1105:1304 1339:4861 4863 4871:4894 4897 4904:11512}); wireframe 0; select ({10226}); label "crRNA"; select ({1288}); label "K164"; select ({11074}); label "Non-target DNA"; select ({4770}); label "K603"; select ({10213 10468 10508 10529 10773 10820 10876}); label "C"; select ({1303}); label "T166"; select ({10186 10255 10272 10353}); label "U"; select ({1298}); label "F165"; select ({1077}); label "K134"; select ({11162}); label "PAM"; select ({10078 10126 10141 10234 10312 10372 10394 10585 10648 10671 10694 10758}); label "A"; select ({4797}); label "K607"; select ({10450 11036 11193}); label "3'"; select ({10055 10099 10163 10417 10440 10492 10735}); label "G"; select ({11023}); label "Target DNA"; select ({10507 11059}); label "5'"; select ({1315}); label "T167"; select ({9780}); label "Direct repeat"; select ({10546 10566 10632 10698 10792 10817 10858}); label "T"; select ({10234 10255 10694 10698}); set labelOffset 1 -1; select ({1288 1298 1303 11023 11059 11074 11162}); set labelOffset 4 4; select ({10055 10078 10099 10817 10820 10858 10876}); set labelOffset -1 -1; select ({10226 11193}); set labelOffset 4 -4; select ({1077 1315 4797 10450 10507}); set labelOffset -4 -4; select ({9780}); set labelOffset 4 -14; select ({10126 10141 10163 10186 10213 10735 10758 10773 10792}); set labelOffset -1 1; select ({4770 10272 10312 10353 10372 10394 10417 10440 10468 10492 10508 10529 10546 10566 10585 10632 10648 10671}); set labelOffset 1 1; select ({11036}); set labelOffset -4 4; measures delete; measure ({11175}) ({4803}); # distance 3.2 "3.2 \u00c5" [DT]-2:D.O2 #11179 [LYS]607:A.NZ #4804; measure ({11195}) ({4766}); # distance 3.65 "3.65 \u00c5" [DC]-1:D.O2 #11199 [LYS]603:A.O #4767; measure ({11124}) ({1314}); # distance 2.33 "2.33 \u00c5" [DT]-4:D.OP2 #11128 [THR]167:A.OG1 #1315; measure ({1309}) ({11124}); # distance 2.89 "2.89 \u00c5" [THR]167:A.N #1310 [DT]-4:D.OP2 #11128; measure ({1302}) ({11123}); # distance 2.88 "2.88 \u00c5" [THR]166:A.N #1303 [DT]-4:D.OP1 #11127; measure ({1302}) ({11124}); # distance 3.04 "3.04 \u00c5" [THR]166:A.N #1303 [DT]-4:D.OP2 #11128; measure ({1307}) ({11123}); # distance 3.14 "3.14 \u00c5" [THR]166:A.OG1 #1308 [DT]-4:D.OP1 #11127; measure ({1080}) ({11144}); # distance 2.84 "2.84 \u00c5" [ALA]135:A.N #1081 [DT]-3:D.OP2 #11148; measure ({1080}) ({11143}); # distance 3.01 "3.01 \u00c5" [ALA]135:A.N #1081 [DT]-3:D.OP1 #11147; select *; set measures angstroms; font measures 15 SansSerif Plain; select measures ({0:8}); measure "2:%VALUE %UNITS//angstroms"; select measures ({null}); select ({0:1070 1085:1281 1316:4762 4772:4794 4804:10469 10474:11044 11059:11200}); Cartoon on; set echo off; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-85.316 -37.56 -98.082} {19.29400000000001 81.001 -19.533} # volume = 974217.0281292901; if (reloadfile) { center {-70.94633333333333 -6.083705128205127 -52.14308974358976}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {-33.011 21.7205 -58.8075} 68.43732548012441 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; } function _setSelectionState() { set hideNotSelected false; SelectionHalos OFF; } function _setState() { # initialize; zoomto 1.0 100; delay 0.5; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; SelectionHalos OFF; delay 1.0; moveto 1.0 { 167 -854 -493 56.31} 100.0 0.0 0.0 {-70.94633333333333 -6.083705128205127 -52.14308974358976} 104.58405695717269 {0 0 0} 0 0 0 3.0 0.0 0.0;; moveto 1.0 { 167 -854 -493 56.31} 813.71 -9.71 2.29 {-70.94633333333333 -6.083705128205127 -52.14308974358976} 104.58405695717269 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false } set antialiasTranslucent true; set antialiasImages true; spin off; } _setState;