exit;
# Jmol state version 14.6.0_2016.06.22  2016-06-22 13:08;
# fullName = "jmolApplet0__6729205189085818__";
# documentBase = "http://proteopedia.org/wiki/index.php?title=CRISPR-Cas9&action=edit";
# codeBase = "http:/wiki/extensions/jsmol/j2s/";

function _setWindowState() {
# width 350;
# height 350;
  stateVersion = 1406000;
  background [x000000];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  set ambientPercent 45;
  set diffusePercent 84;
  set specular true;
  set specularPercent 22;
  set specularPower 40;
  set specularExponent 6;
  set celShading false;
  set celShadingPower 10;
  set zShadePower 3;
}

function _setFileState() {
  set allowEmbeddedScripts false;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set autoBond true;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0 0 0};
  set defaultLoadFilter "";
  set defaultLoadScript "";
  set defaultStructureDssp true;
  set defaultVDW Auto;
  set forceAutoBond false;
# set defaultDirectory "";
# set loadFormat "http://files.rcsb.org/view/%FILE.pdb";
# set loadLigandFormat "http://www.rcsb.org/pdb/files/ligand/%FILE.cif";
# set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True";
# set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE";
# set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
# set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.omap";
# set edsUrlFormatDiff "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file_diff.omap";
# set edsUrlCutoff "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.sfdat";
  set bondingVersion 0;
  set legacyAutoBonding false;
  set legacyHAddition false;
  set legacyJavaFloat false;
  set minBondDistance 0.4;
  set minimizationCriterion  0.001;
  set minimizationSteps  100;
  set multipleBondBananas false;
  set pdbAddHydrogens false;
  set pdbGetHeader false;
  set pdbSequential false;
  set percentVdwAtom 23;
  set smallMoleculeMaxAtoms 40000;
  set smartAromatic true;
  reloadfile = false;
    load /*file*/"/cgi-bin/getfrozenstructure?e44061e874ac35d8806b45eaf9f9ebaf";
  reloadfile = true;
}

function _setParameterState() {
   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlabelpdb "%m%r";
   set defaultlabelxyz "%a";
   set defaultlattice "{0 0 0}";
   set defaultloadfilter "";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowmoveatoms false;
  set allowrotateselected false;
  set animationmode "once";
  set appletproxy "";
  set applysymmetrytobonds false;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set axes window;
  set axesmode 0;
  set axesoffset 0.0;
  set axesscale 2.0;
  set backbonesteps false;
  set bondmodeor false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonbaseedges false;
  set cartoonfancy false;
  set cartoonladders false;
  set cartoonrockets false;
  set cartoonsfancy false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set defaultstructuredssp true;
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotscale 1;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawfontsize 14.0;
  set drawhover false;
  set dsspcalculatehydrogenalways true;
  set edsurlformatdiff "http://eds.bmc.uu.se/eds/dfs/\ufffd\ufffd/%file/%file_diff.omap";
  set ellipsoidarcs false;
  set ellipsoidarrows false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set energyunits "kJ";
  set forceautobond false;
  set gestureswipefactor 1.0;
  set greyscalerendering false;
  set hbondsangleminimum 90.0;
  set hbondsbackbone false;
  set hbondsdistancemaximum 3.25;
  set hbondsrasmol true;
  set hbondssolid false;
  set helixstep 1;
  set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set hoverdelay 0.5;
  set isosurfacekey false;
  set isosurfacepropertysmoothing true;
  set isosurfacepropertysmoothingpower 7;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set measureallmodels false;
  set measurementlabels true;
  set meshscale 1;
  set messagestylechime false;
  set minbonddistance 0.4;
  set minimizationcriterion 0.001;
  set minimizationrefresh true;
  set minimizationsilent false;
  set minimizationsteps 100;
  set minpixelselradius 6;
  set modulationscale 1.0;
  set monitorenergy false;
  set multiplebondbananas false;
  set multiplebondradiusfactor 0.0;
  set multiplebondspacing -1.0;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile=";
  set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile=";
  set partialdots false;
  set particleradius 20.0;
  set pdbaddhydrogens false;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 23;
  set pickingspinrate 10;
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showmeasurements true;
  set showmodulationvectors false;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set showunitcelldetails true;
  set slabbyatom false;
  set slabbymolecule false;
  set smallmoleculemaxatoms 40000;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone true;
  set starwidth 0.05;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set strutdefaultradius 0.3;
  set strutlengthmaximum 7.0;
  set strutsmultiple false;
  set strutspacing 6;
  set tracealpha true;
  set translucent true;
  set twistedsheets false;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vectorscentered false;
  set vectorsymmetry false;
  set vectortrail 0;
  set vibrationscale 1.0;
  set waitformoveto true;
  set wireframerotation false;
  set zdepth 0;
  set zoomheight false;
  set zoomlarge true;
  set zslab 50;
# user-defined atom sets; 
  @~anomalous_atoms ({});
  @~backbone_invisible ({});
  @~hydroxy_unchained_nucs ({});
  @~nobackbone_aas ({});
  @~nophosphorus_nucs ({9646:9664 11045:11058});
  @~protein ({0:9645});
  @~unbondable_aas ({});
  @~unchained_aas ({});
  @~unchained_nucs ({});
# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset 1 1;
  set labelAlignment left;
  set labelPointer off;
  font label 13 SansSerif Plain;
}

function _setModelState() {
  calculate hbonds;
  select all;
  wireframe off;
  spacefill off;
  dots off;
  backbone off;
  trace off;
  ribbon off;
  cartoon off;
  strands off;
  rocket off;
  meshribbon off;
  isosurface off;
  halos off;
  color cpk;
  hbonds off;
  select ({11122:11200});
  color atoms opaque [xff00ff];
  select ({11045:11121});
  color atoms opaque [xff0000];
  select ({4894:4902});
  color atoms translucent 0.625 [xff00ff];
  select ({9646:10473});
  color atoms opaque [x00ff00];
  select ({0:4893 4903:9645});
  color atoms translucent 0.625 [x00ffff];
  select ({10474:11044});
  color atoms opaque [xffa500];
  select ({0:11200});
  Spacefill 0;
  select BONDS ({0:11598});
  wireframe 0;
  select ({10450 11036 11193});
  label "3'";
  select ({9780});
  label "Direct repeat";
  select ({11162});
  label "PAM";
  select ({10213 10468 10508 10529 10773 10820 10876});
  label "C";
  select ({10546 10566 10632 10698 10792 10817 10858});
  label "T";
  select ({10507 11059});
  label "5'";
  select ({11074});
  label "Non-target DNA";
  select ({11023});
  label "Target DNA";
  select ({10055 10099 10163 10417 10440 10492 10735});
  label "G";
  select ({10226});
  label "crRNA";
  select ({10078 10126 10141 10234 10312 10372 10394 10585 10648 10671 10694 10758});
  label "A";
  select ({10186 10255 10272 10353});
  label "U";
  select ({10234 10255 10694 10698});
  set labelOffset 1 -1;
  select ({11023 11059 11074 11162});
  set labelOffset 4 4;
  select ({10226 11193});
  set labelOffset 4 -4;
  select ({10055 10078 10099 10817 10820 10858 10876});
  set labelOffset -1 -1;
  select ({10450 10507});
  set labelOffset -4 -4;
  select ({9780});
  set labelOffset 4 -14;
  select ({10126 10141 10163 10186 10213 10735 10758 10773 10792});
  set labelOffset -1 1;
  select ({10272 10312 10353 10372 10394 10417 10440 10468 10492 10508 10529 10546 10566 10585 10632 10648 10671});
  set labelOffset 1 1;
  select ({11036});
  set labelOffset -4 4;
  select ({9646:10469 10474:11044 11059:11200});
  Cartoon on;
  set echo off;
  hover "%U";
  frank on;
  font frank 16 SansSerif Plain;
  select *;
  set fontScaling false;
}

function _setPerspectiveState() {
  if (reloadfile) {   set perspectiveModel 11; }
  set scaleAngstromsPerInch 0;
  set perspectiveDepth true;
  set visualRange 5;
  set cameraDepth 3;
  boundbox corners {-85.316 -37.56 -98.082} {19.29400000000001 81.001 -19.533} # volume = 974217.0281292901;
  if (reloadfile) {   center {-40.64234178743959 15.79899879227052 -71.44332729468594}; }
# removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {-33.011 21.7205 -58.8075} 68.43732548012441 {0 0 0} 0 0 0 3.0 0.0 0.0;
# removed save orientation "default";
  slab 100;depth 0;
  set slabRange 0.0;
  set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20;
}

function _setSelectionState() {
  set hideNotSelected false;
  SelectionHalos OFF;
}

function _setState() {
# initialize;
  zoomto 1.0 100;
  delay 0.5;
  select all;
  labels off;
  measurements off;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setParameterState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing true;
  SelectionHalos OFF;
  delay 1.0;
    moveto 1.0 { -194 -346 -918 78.35} 100.0 0.0 0.0 {-40.64234178743959 15.79899879227052 -71.44332729468594} 70.3168510237961 {0 0 0} 0 0 0 3.0 0.0 0.0;; 
    moveto 1.0 { -194 -346 -918 78.35} 152.09 -0.57 8.57 {-40.64234178743959 15.79899879227052 -71.44332729468594} 70.3168510237961 {0 0 0} 0 0 0 3.0 0.0 0.0;; 

  set refreshing true;
  if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }
  set antialiasTranslucent true;
  set antialiasImages true;
  spin off;
}
_setState;