exit;
# Jmol state version 14.6.0_2016.06.22  2016-06-22 13:08;
# fullName = "jmolApplet0__9254469078502776__";
# documentBase = "http://proteopedia.org/wiki/index.php?title=CRISPR-Cas9&action=edit";
# codeBase = "http:/wiki/extensions/jsmol/j2s/";

function _setWindowState() {
# width 350;
# height 350;
  stateVersion = 1406000;
  background [x000000];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  set ambientPercent 45;
  set diffusePercent 84;
  set specular true;
  set specularPercent 22;
  set specularPower 40;
  set specularExponent 6;
  set celShading false;
  set celShadingPower 10;
  set zShadePower 3;
}

function _setFileState() {
  set allowEmbeddedScripts false;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set autoBond true;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0 0 0};
  set defaultLoadFilter "";
  set defaultLoadScript "";
  set defaultStructureDssp true;
  set defaultVDW Auto;
  set forceAutoBond false;
# set defaultDirectory "";
# set loadFormat "http://files.rcsb.org/view/%FILE.pdb";
# set loadLigandFormat "http://www.rcsb.org/pdb/files/ligand/%FILE.cif";
# set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True";
# set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE";
# set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
# set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.omap";
# set edsUrlFormatDiff "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file_diff.omap";
# set edsUrlCutoff "http://eds.bmc.uu.se/eds/dfs/ยร/%file/%file.sfdat";
  set bondingVersion 0;
  set legacyAutoBonding false;
  set legacyHAddition false;
  set legacyJavaFloat false;
  set minBondDistance 0.4;
  set minimizationCriterion  0.001;
  set minimizationSteps  100;
  set multipleBondBananas false;
  set pdbAddHydrogens false;
  set pdbGetHeader false;
  set pdbSequential false;
  set percentVdwAtom 23;
  set smallMoleculeMaxAtoms 40000;
  set smartAromatic true;
  reloadfile = false;
    load /*file*/"/cgi-bin/getfrozenstructure?ce8514cc5aaf7818a31c1779fc0adf71";
  reloadfile = true;
}

function _setParameterState() {
   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlabelpdb "%m%r";
   set defaultlabelxyz "%a";
   set defaultlattice "{0 0 0}";
   set defaultloadfilter "";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowmoveatoms false;
  set allowrotateselected false;
  set animationmode "palindrome";
  set appletproxy "";
  set applysymmetrytobonds false;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set axes window;
  set axesmode 0;
  set axesoffset 0.0;
  set axesscale 2.0;
  set backbonesteps false;
  set bondmodeor false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonbaseedges false;
  set cartoonfancy false;
  set cartoonladders false;
  set cartoonrockets false;
  set cartoonsfancy false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set defaultstructuredssp true;
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotscale 1;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawfontsize 14.0;
  set drawhover false;
  set dsspcalculatehydrogenalways true;
  set edsurlformatdiff "http://eds.bmc.uu.se/eds/dfs/\ufffd\ufffd/%file/%file_diff.omap";
  set ellipsoidarcs false;
  set ellipsoidarrows false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set energyunits "kJ";
  set forceautobond false;
  set gestureswipefactor 1.0;
  set greyscalerendering false;
  set hbondsangleminimum 90.0;
  set hbondsbackbone false;
  set hbondsdistancemaximum 3.25;
  set hbondsrasmol true;
  set hbondssolid false;
  set helixstep 1;
  set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set hoverdelay 0.5;
  set isosurfacekey false;
  set isosurfacepropertysmoothing true;
  set isosurfacepropertysmoothingpower 7;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set measureallmodels false;
  set measurementlabels true;
  set meshscale 1;
  set messagestylechime false;
  set minbonddistance 0.4;
  set minimizationcriterion 0.001;
  set minimizationrefresh true;
  set minimizationsilent false;
  set minimizationsteps 100;
  set minpixelselradius 6;
  set modulationscale 1.0;
  set monitorenergy false;
  set multiplebondbananas false;
  set multiplebondradiusfactor 0.0;
  set multiplebondspacing -1.0;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile=";
  set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile=";
  set partialdots false;
  set particleradius 20.0;
  set pdbaddhydrogens false;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 23;
  set pickingspinrate 10;
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showmeasurements true;
  set showmodulationvectors false;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set showunitcelldetails true;
  set slabbyatom false;
  set slabbymolecule false;
  set smallmoleculemaxatoms 40000;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone false;
  set starwidth 0.05;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set strutdefaultradius 0.3;
  set strutlengthmaximum 7.0;
  set strutsmultiple false;
  set strutspacing 6;
  set tracealpha true;
  set translucent true;
  set twistedsheets false;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vectorscentered false;
  set vectorsymmetry false;
  set vectortrail 0;
  set vibrationscale 1.0;
  set waitformoveto true;
  set wireframerotation false;
  set zdepth 0;
  set zoomheight false;
  set zoomlarge true;
  set zslab 50;
# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset 4 -4;
  set labelAlignment left;
  set labelPointer off;
  font label 13 SansSerif Plain;
}

function _setModelState() {
  calculate hbonds;
  select all;
  wireframe off;
  spacefill off;
  dots off;
  backbone off;
  trace off;
  ribbon off;
  cartoon off;
  strands off;
  rocket off;
  meshribbon off;
  isosurface off;
  halos off;
  color cpk;
  hbonds off;
data "connect_atoms"
5754	7499	18432	0.0	0.0	hbond;
5756	7498	18432	0.0	0.0	hbond;
5761	7501	18432	0.0	0.0	hbond;
5731	7518	18432	0.0	0.0	hbond;
5733	7517	18432	0.0	0.0	hbond;
5738	7520	18432	0.0	0.0	hbond;
5648	7601	18432	0.0	0.0	hbond;
5650	7600	18432	0.0	0.0	hbond;
5655	7603	18432	0.0	0.0	hbond;
5605	7642	18432	0.0	0.0	hbond;
5607	7641	18432	0.0	0.0	hbond;
5612	7644	18432	0.0	0.0	hbond;
5562	7682	18432	0.0	0.0	hbond;
5564	7681	18432	0.0	0.0	hbond;
5569	7684	18432	0.0	0.0	hbond;
5539	7701	18432	0.0	0.0	hbond;
5541	7700	18432	0.0	0.0	hbond;
5546	7703	18432	0.0	0.0	hbond;
5517	7720	18432	0.0	0.0	hbond;
5523	7722	18432	0.0	0.0	hbond;
5455	7782	18432	0.0	0.0	hbond;
5461	7784	18432	0.0	0.0	hbond;
5433	7802	18432	0.0	0.0	hbond;
5439	7804	18432	0.0	0.0	hbond;
5411	7822	18432	0.0	0.0	hbond;
5417	7824	18432	0.0	0.0	hbond;
5388	7842	18432	0.0	0.0	hbond;
5390	7841	18432	0.0	0.0	hbond;
5395	7844	18432	0.0	0.0	hbond;
5364	7861	18432	0.0	0.0	hbond;
5366	7860	18432	0.0	0.0	hbond;
5371	7863	18432	0.0	0.0	hbond;
7758	5480	18432	0.0	0.0	hbond;
7764	5482	18432	0.0	0.0	hbond;
7658	5588	18432	0.0	0.0	hbond;
7664	5590	18432	0.0	0.0	hbond;
7617	5631	18432	0.0	0.0	hbond;
7619	5630	18432	0.0	0.0	hbond;
7624	5633	18432	0.0	0.0	hbond;
7576	5674	18432	0.0	0.0	hbond;
7578	5673	18432	0.0	0.0	hbond;
7583	5676	18432	0.0	0.0	hbond;
7555	5694	18432	0.0	0.0	hbond;
7561	5696	18432	0.0	0.0	hbond;
7534	5714	18432	0.0	0.0	hbond;
7540	5716	18432	0.0	0.0	hbond;
7474	5780	18432	0.0	0.0	hbond;
7476	5779	18432	0.0	0.0	hbond;
7481	5782	18432	0.0	0.0	hbond;
7383	7130	18432	0.0	0.0	hbond;
7385	7129	18432	0.0	0.0	hbond;
7390	7132	18432	0.0	0.0	hbond;
7340	7172	18432	0.0	0.0	hbond;
7342	7171	18432	0.0	0.0	hbond;
7347	7174	18432	0.0	0.0	hbond;
7317	7192	18432	0.0	0.0	hbond;
7319	7191	18432	0.0	0.0	hbond;
7324	7194	18432	0.0	0.0	hbond;
7209	7300	18432	0.0	0.0	hbond;
7211	7299	18432	0.0	0.0	hbond;
7216	7302	18432	0.0	0.0	hbond;
7147	7366	18432	0.0	0.0	hbond;
7153	7368	18432	0.0	0.0	hbond;
7104	7409	18432	0.0	0.0	hbond;
7106	7408	18432	0.0	0.0	hbond;
7111	7411	18432	0.0	0.0	hbond;
7038	6848	18432	0.0	0.0	hbond;
7040	6847	18432	0.0	0.0	hbond;
7045	6850	18432	0.0	0.0	hbond;
7016	6868	18432	0.0	0.0	hbond;
7022	6870	18432	0.0	0.0	hbond;
6994	6888	18432	0.0	0.0	hbond;
7000	6890	18432	0.0	0.0	hbond;
6823	7064	18432	0.0	0.0	hbond;
6829	7066	18432	0.0	0.0	hbond;
6593	6534	18432	0.0	0.0	hbond;
6595	6533	18432	0.0	0.0	hbond;
6600	6536	18432	0.0	0.0	hbond;
6508	6639	18432	0.0	0.0	hbond;
6510	6638	18432	0.0	0.0	hbond;
6515	6641	18432	0.0	0.0	hbond;
6485	6659	18432	0.0	0.0	hbond;
6487	6658	18432	0.0	0.0	hbond;
6492	6661	18432	0.0	0.0	hbond;
6399	5823	18432	0.0	0.0	hbond;
6405	5825	18432	0.0	0.0	hbond;
6377	5843	18432	0.0	0.0	hbond;
6383	5845	18432	0.0	0.0	hbond;
6355	5863	18432	0.0	0.0	hbond;
6361	5865	18432	0.0	0.0	hbond;
6333	5883	18432	0.0	0.0	hbond;
6339	5885	18432	0.0	0.0	hbond;
6183	5993	18432	0.0	0.0	hbond;
6185	5992	18432	0.0	0.0	hbond;
6190	5995	18432	0.0	0.0	hbond;
6161	6013	18432	0.0	0.0	hbond;
6167	6015	18432	0.0	0.0	hbond;
6030	6144	18432	0.0	0.0	hbond;
6036	6146	18432	0.0	0.0	hbond;
5967	6209	18432	0.0	0.0	hbond;
5969	6208	18432	0.0	0.0	hbond;
5974	6211	18432	0.0	0.0	hbond;
5900	6316	18432	0.0	0.0	hbond;
5906	6318	18432	0.0	0.0	hbond;
5797	6424	18432	0.0	0.0	hbond;
5799	6423	18432	0.0	0.0	hbond;
3977	3787	18432	0.0	0.0	hbond;
3979	3786	18432	0.0	0.0	hbond;
3984	3789	18432	0.0	0.0	hbond;
3955	3807	18432	0.0	0.0	hbond;
3961	3809	18432	0.0	0.0	hbond;
3933	3827	18432	0.0	0.0	hbond;
3939	3829	18432	0.0	0.0	hbond;
3762	4003	18432	0.0	0.0	hbond;
3768	4005	18432	0.0	0.0	hbond;
3532	3473	18432	0.0	0.0	hbond;
3534	3472	18432	0.0	0.0	hbond;
3539	3475	18432	0.0	0.0	hbond;
3447	3578	18432	0.0	0.0	hbond;
3449	3577	18432	0.0	0.0	hbond;
3454	3580	18432	0.0	0.0	hbond;
3424	3598	18432	0.0	0.0	hbond;
3426	3597	18432	0.0	0.0	hbond;
3431	3600	18432	0.0	0.0	hbond;
3338	2762	18432	0.0	0.0	hbond;
3344	2764	18432	0.0	0.0	hbond;
3316	2782	18432	0.0	0.0	hbond;
3322	2784	18432	0.0	0.0	hbond;
3294	2802	18432	0.0	0.0	hbond;
3300	2804	18432	0.0	0.0	hbond;
3272	2822	18432	0.0	0.0	hbond;
3278	2824	18432	0.0	0.0	hbond;
3122	2932	18432	0.0	0.0	hbond;
3124	2931	18432	0.0	0.0	hbond;
3129	2934	18432	0.0	0.0	hbond;
3100	2952	18432	0.0	0.0	hbond;
3106	2954	18432	0.0	0.0	hbond;
2969	3083	18432	0.0	0.0	hbond;
2975	3085	18432	0.0	0.0	hbond;
2906	3148	18432	0.0	0.0	hbond;
2908	3147	18432	0.0	0.0	hbond;
2913	3150	18432	0.0	0.0	hbond;
2839	3255	18432	0.0	0.0	hbond;
2845	3257	18432	0.0	0.0	hbond;
2736	3363	18432	0.0	0.0	hbond;
2738	3362	18432	0.0	0.0	hbond;
end "connect_atoms";
  select ({57:90 1202:1235 4111:4144});
  color atoms opaque [x8b008b];
  select ({644:764 1906:2050 4805:4936});
  color atoms opaque [x2e8b57];
  select ({7464:7867});
  color atoms opaque [xffa500];
  select ({0:56 598:643 765:1201 1860:1905 2051:2507 4053:4110 4759:4804 4937:5353});
  color atoms opaque [xf5deb3];
  select ({0:7867});
  Spacefill 0;
  select ({2508:4052 5354:7435});
  color atoms opaque [x00ff00];
  select ({91:597 1236:1859 4145:4758});
  color atoms opaque [x00bfff];
  select BONDS ({0:4660});
  wireframe 0;
  select ({1291});
  label "REC lobe";
  select ({3460});
  label "sgRNA";
  select ({314});
  label "Helical recognition REC lobe";
  select ({1059});
  label "Nuclease Nuc lobe";
  select ({693 1975});
  label "HNH";
  select ({2349});
  label "NUC lobe";
  select ({693 1059 2349 3460});
  set labelOffset 4 -4;
  select ({1975});
  set labelOffset -4 -4;
  select ({314 1291});
  set labelOffset 4 4;
  select ({2508:4052 5354:7435 7465:7867});
  Cartoon on;
  select ({0:2507 4053:5353});
  Rockets on;
  set echo off;
  set echo ID "simplemodel" [0 100%]; echo "Displaying simplified model";
  font echo 22 SansSerif Plain; color echo [xffa500];
  set echo bottom center; echo "pre-target state of CAS9";
  font echo 24 SansSerif Plain; color echo [xff0000]; color echo background [xffff00];
  hover "%U";
  frank on;
  font frank 16 SansSerif Plain;
  select *;
  set fontScaling false;
}

function _setFrameState() {
# frame state;
# modelCount 3;
# first 1.1;
# last 1.3;
  frame RANGE 1.1 1.3;
  animation DIRECTION +1;
  animation FPS 10;
  animation MODE PALINDROME 1.0 1.0;
  model 1.2;
  animation OFF;
}

function _setPerspectiveState() {
  if (reloadfile) {   set perspectiveModel 11; }
  set scaleAngstromsPerInch 0;
  set perspectiveDepth true;
  set visualRange 5;
  set cameraDepth 3;
  boundbox corners {-81.558 -103.506 -62.058} {28.997 6.01700000000001 48.57} # volume = 1339518.70113642;
  if (reloadfile) {   center {-26.280500000000004 -48.7445 -6.744}; }
# removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {-26.280500000000004 -48.7445 -6.744} 72.97317238408884 {0 0 0} 0 0 0 3.0 0.0 0.0;
# removed save orientation "default";
  slab 100;depth 0;
  set slabRange 0.0;
  set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20;
}

function _setSelectionState() {
  set hideNotSelected false;
  SelectionHalos OFF;
}

function _setState() {
# initialize;
  select all;
  labels off;
  measurements off;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setParameterState;
  _setModelState;
  _setFrameState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing true;
  SelectionHalos OFF;
  delay 1.0;
    moveto 1.0 { -53 235 971 155.3} 100.0 0.0 0.0 {-26.280500000000004 -48.7445 -6.744} 72.97317238408884 {0 0 0} 0 0 0 3.0 0.0 0.0;; 
    moveto 1.0 { -53 235 971 155.3} 115.0 -9.43 -5.71 {-26.280500000000004 -48.7445 -6.744} 72.97317238408884 {0 0 0} 0 0 0 3.0 0.0 0.0;; 

  set refreshing true;
  if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }
  set antialiasTranslucent true;
  set antialiasImages true;
  spin off;
}
_setState;