exit;
# Jmol state version 14.28.4  2018-01-24 23:36;
# fullName = "jmolApplet0__552804491896692__";
# documentBase = "http://proteopedia.org/wiki/index.php?title=CRISPR-Cas9&action=edit";
# codeBase = "http:/wiki/extensions/jsmol/j2s/";

function _setWindowState() {
# width 350;
# height 350;
  stateVersion = 1428004;
  background [x000000];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  set ambientPercent 45;
  set diffusePercent 84;
  set specular true;
  set specularPercent 22;
  set specularPower 40;
  set specularExponent 6;
  set celShading false;
  set celShadingPower 10;
  set zShadePower 3;
}

function _setFileState() {
  set allowEmbeddedScripts false;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set autoBond true;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0 0 0};
  set defaultLoadFilter "";
  set defaultLoadScript "";
  set defaultStructureDssp true;
  set defaultVDW Auto;
  set forceAutoBond false;
# set defaultDirectory "";
# set loadFormat "https://files.rcsb.org/download/%FILE.pdb";
# set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif";
# set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true";
# set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE";
# set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
  set bondingVersion 0;
  set legacyAutoBonding false;
  set legacyAutoBonding false;
  set legacyHAddition false;
  set legacyJavaFloat false;
  set minBondDistance 0.4;
  set minimizationCriterion  0.001;
  set minimizationSteps  100;
  set multipleBondBananas false;
  set pdbAddHydrogens false;
  set pdbGetHeader false;
  set pdbSequential false;
  set percentVdwAtom 23;
  set smallMoleculeMaxAtoms 40000;
  set smartAromatic true;
  reloadfile = false;
  if (loadedfileprev != "9d62f8638c6affb57615762ffba03252");
    load /*file*/"/cgi-bin/getfrozenstructure?9d62f8638c6affb57615762ffba03252";
    loadedfileprev = "9d62f8638c6affb57615762ffba03252";
    reloadfile = true;
  endif;
}

function _setParameterState() {
   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlabelpdb "%m%r";
   set defaultlabelxyz "%a";
   set defaultlattice "{0 0 0}";
   set defaultloadfilter "";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowmoveatoms false;
  set allowrotateselected false;
  set animationmode "once";
  set appletproxy "";
  set applysymmetrytobonds false;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set axes window;
  set axesmode 0;
  set axesoffset 0.0;
  set axesscale 2.0;
  set bondmodeor false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonbaseedges false;
  set cartoonblockheight 0.5;
  set cartoonblocks false;
  set cartoonfancy false;
  set cartoonladders false;
  set cartoonrockets false;
  set cartoonsfancy false;
  set cartoonsteps false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set defaultstructuredssp true;
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotscale 1;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawfontsize 14.0;
  set drawhover false;
  set dsspcalculatehydrogenalways true;
  set ellipsoidarcs false;
  set ellipsoidarrows false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set energyunits "kJ";
  set forceautobond false;
  set gestureswipefactor 1.0;
  set greyscalerendering false;
  set hbondsbackbone false;
  set hbondsrasmol true;
  set hbondssolid false;
  set helixstep 1;
  set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hiddenlinesdashed false;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set hoverdelay 0.5;
  set isosurfacekey false;
  set isosurfacepropertysmoothing true;
  set isosurfacepropertysmoothingpower 7;
  set jmolinjspecview true;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set measureallmodels false;
  set measurementlabels true;
  set meshscale 1;
  set messagestylechime false;
  set minbonddistance 0.4;
  set minimizationcriterion 0.001;
  set minimizationrefresh true;
  set minimizationsilent false;
  set minimizationsteps 100;
  set minpixelselradius 6;
  set modulationscale 1.0;
  set monitorenergy false;
  set multiplebondbananas false;
  set multiplebondradiusfactor 0.0;
  set multiplebondspacing -1.0;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set nbocharges true;
  set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile=";
  set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile=";
  set partialdots false;
  set particleradius 20.0;
  set pdbaddhydrogens false;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 23;
  set pickingspinrate 10;
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showmeasurements true;
  set showmodulationvectors false;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set showunitcelldetails true;
  set slabbyatom false;
  set slabbymolecule false;
  set smallmoleculemaxatoms 40000;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone true;
  set starwidth 0.05;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set strutdefaultradius 0.3;
  set strutlengthmaximum 7.0;
  set strutsmultiple false;
  set strutspacing 6;
  set tracealpha true;
  set translucent true;
  set twistedsheets false;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vectorscentered false;
  set vectorsymmetry false;
  set vectortrail 0;
  set vibrationscale 1.0;
  set waitformoveto true;
  set wireframerotation false;
  set zdepth 0;
  set zoomheight false;
  set zoomlarge true;
  set zslab 50;
# user-defined atom sets; 
  @~anomalous_atoms ({});
  @~backbone_invisible ({});
  @~hydroxy_unchained_nucs ({});
  @~nobackbone_aas ({});
  @~nophosphorus_nucs ({9964:9979 10567:10583});
  @~protein ({0:8418});
  @~unbondable_aas ({});
  @~unchained_aas ({});
  @~unchained_nucs ({});
# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset -4 4;
  set labelAlignment left;
  set labelPointer off;
  font label 13 SansSerif Plain;
}

function _setModelState() {
  calculate hbonds;
  select all;
  wireframe off;
  spacefill off;
  dots off;
  backbone off;
  trace off;
  ribbon off;
  cartoon off;
  strands off;
  rocket off;
  meshribbon off;
  isosurface off;
  halos off;
  color cpk;
  hbonds off;
  select ({294:588});
  color atoms opaque [x2e8b57];
  select ({7755:8418});
  color atoms opaque [xfa8072];
  select ({589:3425});
  color atoms opaque [xa9a9a9];
  select ({9667 9668 9670 9672 9674 9676 9679 9681 9682 9687 9688 9690 9692 9694 9696 9698 9699 9702 9704 9709 9710 9712 9714 9716 9718 9720 9721 9724 9726 9731 9732 9734 9736 9738 9740 9742 9743 9746 9748 9753 9754 9756 9758 9760 9762 9764 9765 9768 9770 9775 9776 9778 9780 9782 9784 9787 9789 9790 9795 9796 9798 9800 9802 9804 9806 9807 9810 9813 9818 9819 9821 9823 9825 9827 9830 9832 9833 9838 9839 9841 9843 9845 9847 9850 9852 9853 9858 9859 9861 9863 9865 9867 9869 9870 9873 9876});
  Spacefill 0.2925;
  select ({9964:10566 10744 10820:10823});
  color atoms opaque [xffa500];
  select ({10688:10730 10745:10748 10824:10833});
  color atoms opaque [xff0000];
  select ({3854:4166 5054:5236});
  color atoms opaque [xffd700];
  select ({7286:7754});
  color atoms opaque [xd2691e];
  select ({6214:6321});
  color atoms opaque [x4169e1];
  select ({4167:5053 10567:10687});
  color atoms opaque [xff00ff];
  select ({0:9662 9877:10833});
  Spacefill 0;
  select ({8419:8851});
  color atoms opaque [x00bfff];
  select ({9664:9666 9669 9671 9673 9677 9684:9686 9689 9691 9693 9706:9708 9711 9713 9715 9728:9730 9733 9735 9737 9750:9752 9755 9757 9759 9772:9774 9777 9779 9781 9785 9788 9792:9794 9797 9799 9801 9808 9815:9817 9820 9822 9824 9828 9835:9837 9840 9842 9844 9848 9855:9857 9860 9862 9864 9871});
  Spacefill 0.255;
  select ({3426:3487});
  color atoms opaque [x696969];
  select ({6322:7285});
  color atoms opaque [xffff00];
  select ({9234:9963});
  color atoms opaque [x00ff00];
  select ({9675 9678 9680 9695 9697 9700 9701 9703 9717 9719 9722 9723 9725 9739 9741 9744 9745 9747 9761 9763 9766 9767 9769 9783 9786 9803 9805 9809 9811 9812 9826 9829 9831 9846 9849 9851 9866 9868 9872 9874 9875});
  Spacefill 0.2775;
  select ({9663 9683 9705 9727 9749 9771 9791 9814 9834 9854});
  Spacefill 0.312;
  select ({9145:9233});
  color atoms opaque [xffffff];
  select ({8852:9144});
  color atoms opaque [xc71585];
  select ({0:293 3488:3853 5237:6213});
  color atoms opaque [x00ffff];
  select BONDS ({9992 9994:10216 10218:10232});
  wireframe 0.16;
  select BONDS ({0:9991 9993 10217 10233:11187});
  wireframe 0;
  select ({10709});
  label "Non-target DNA";
  select ({9202});
  label "Tetraloop";
  select ({9465});
  label "Repeat:anti-repeat duplex";
  select ({10579});
  label "PAM";
  select ({9020});
  label "Repeat";
  select ({9980});
  label "PAM duplex";
  select ({9343});
  label "Anti-repeat";
  select ({10080});
  label "Target DNA";
  select ({10307});
  label "Guide:target heteroduplex";
  select ({8532});
  label "Guide";
  select ({9663 9683 9705 9727 9749 9771 9791 9814 9834 9854});
  label "%n %r";
  select ({9786});
  label "Stem loop 1";
  select ({9465});
  set labelOffset 4 24;
  select ({9343 10709});
  set labelOffset 4 -4;
  select ({9663 9683 9705 9727 9749 9771 9791 9814 9834 9854});
  set labelOffset -12 4;
  select ({9020 9202 9786 9980});
  set labelOffset -4 4;
  select ({10579});
  set labelOffset -1 4;
  select ({8532 10080 10307});
  set labelOffset 4 4;
  select ({8419:9959 9964:10730});
  Cartoon 0.8;
  set echo off;
  hover "%U";
  frank on;
  font frank 16 SansSerif Plain;
  select *;
  set fontScaling false;
}

function _setPerspectiveState() {
  if (reloadfile) {   set perspectiveModel 11; }
  set scaleAngstromsPerInch 0;
  set perspectiveDepth true;
  set visualRange 5;
  set cameraDepth 3;
  boundbox corners {-6.516999999999996 -4.951999999999998 31.801999999999992} {71.47 103.839 137.294} # volume = 895024.057873764;
  if (reloadfile) {   center {16.39921192052979 36.234748344370864 55.5461589403974}; }
# removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {32.4765 49.4435 84.548} 72.56547259773268 {0 0 0} 0 0 0 3.0 0.0 0.0;
# removed save orientation "default";
  slab 100;depth 0;
  set slabRange 0.0;
  set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20;
}

function _setSelectionState() {
  set hideNotSelected false;
  SelectionHalos OFF;
}

function _setState() {
# initialize;
  select all;
  labels off;
  measurements off;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setParameterState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing false;
  SelectionHalos OFF;
  delay 1.0;
    moveto 1.0 { 678 665 314 59.62} 535.04 -14.29 -0.86 {16.39921192052979 36.234748344370864 55.5461589403974} 92.32749568265504 {0 0 0} 0 0 0 3.0 0.0 0.0;; 

  set refreshing true;
  if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }
  set antialiasTranslucent true;
  set antialiasImages true;
  spin off;
}
_setState;