exit; # Jmol state version 14.28.4 2018-01-24 23:36; # fullName = "jmolApplet0__793633587037635__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=CRISPR-Cas9&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1428004; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "2ccede112780a94592edf96642f32d01"); load /*file*/"/cgi-bin/getfrozenstructure?2ccede112780a94592edf96642f32d01"; loadedfileprev = "2ccede112780a94592edf96642f32d01"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels false; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({9963:9978 10564:10580}); @~protein ({0:8417}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); # label defaults; select none; color label none; background label none; set labelOffset -4 -4; set labelAlignment left; set labelPointer off; font label 13 SansSerif Plain; } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({10565 10566 10568 10570 10571 10573 10576 10578:10581 10585 10586 10588 10590 10591 10593 10596 10598:10601 10605 10606 10608 10610 10611 10613 10615 10616 10619 10622 10623 10627 10628 10630 10632 10633 10635 10637 10638 10641 10644 10645 10649 10650 10652 10654 10655 10657 10659 10660 10663 10666 10667 10671 10672 10674 10676 10677 10679 10682 10684:10686}); color atoms opaque [xff00ff]; select ({10687 10691 10692 10694 10696 10697 10699 10701 10702 10705 10707 10708 10712 10713 10715 10717 10718 10720 10722 10723 10726 10729}); color atoms opaque [xff0000]; select ({7881 7888 7889 7896 7929 7936 7938 7939 7948 8134 8141 8143 8144 10572 10575 10592 10595 10612 10614 10618 10620 10621 10634 10636 10640 10642 10643 10656 10658 10662 10664 10665 10678 10681}); Spacefill 0.2775; select ({1 2 4:6 8 12 13 15 16 20 21 23:29 32 33 35:38 40 41 43:46 48 49 52 53 55:58 60 61 63 64 68 69 71:74 76 77 80 81 83:86 88 89 91 93 95 96 98 101 102 104:106 108 109 112 113 115:121 124 125 128 129 131:134 136 137 139:142 144 145 147 148 152 153 155 157 158 160 162 163 165 167 169 170 172:174 176 180 181 183 184 188 189 191:193 195 196 198:201 203 204 206 207 211 212 214 216 217 220 221 223:225 227 228 230:232 234 238 239 241:244 246 247 249:255 257 258 260:263 266 267 269:271 275 276 278 280 281 283 284 288 289 291:293 295 296 298:300 304 305 307 308 312 313 315 316 320 321 323:325 329 330 333 334 336:338 340 344 345 347:349 351 355 356 358 361 362 364:367 370 371 373:375 377 381 382 385 386 388 390 391 393:395 397 401 402 404:406 408 412 413 415:418 420 421 423:426 429 430 432:434 436 440 441 443:445 447 451 452 454:456 458 462 463 465:467 469 473 474 476 477 479 480 483 484 486:488 490 494 495 497:500 502 503 505:507 511 512 514:516 518 522 523 525:527 529 530 532:535 538 539 541 543 544 546:549 551 552 554:557 559 560 562:568 570 571 573 574 578 579 581:587 590 591 593 594 598 599 601:604 606 607 609:612 614 615 617 619 621 622 624 625 629 630 632 633 635 636 639 640 642 645 646 648 650 651 653:656 658 659 661 664 665 668 669 671:674 676 677 679 680 684 685 687:689 691 692 694:700 703 704 706:708 712 713 715 717 718 720:722 724 728 729 731:733 735 736 738:741 744 745 748 749 751:754 756 757 759 762 763 765:767 771 772 774 776 777 779:782 784 785 787 790 791 793:795 799 800 802:804 808 809 811:813 817 818 820:826 828 829 831 834 835 837 839 840 842 844 845 847:850 852 853 855:858 860 861 863 864 866 867 870 871 873:876 878 879 881 883 884 886:889 892 893 895:897 899 903 904 906:908 910 914 915 918 919 921:923 925 926 928 929 931 932 935 936 938 939 943 944 946:948 950 951 953 955 956 958 960 961 963:965 967 968 970:972 976 977 979:981 985 986 988 989 993 994 996 998 1000 1001 1004 1005 1007 1009 1010 1012:1014 1018 1019 1021:1024 1026 1027 1029 1032 1033 1035 1037 1039 1040 1042 1044 1045 1047:1049 1053 1054 1056:1058 1062 1063 1065:1068 1070 1071 1073 1076 1077 1079:1081 1083 1087 1088 1090 1091 1095 1096 1098 1101 1102 1104:1107 1110 1111 1113 1115 1116 1118:1121 1123 1124 1126 1128 1129 1131 1133 1134 1136:1139 1142 1143 1145:1151 1154 1155 1157:1159 1161 1162 1164 1166 1167 1169:1171 1175 1176 1178:1181 1183 1184 1186:1188 1192 1193 1195:1198 1200 1201 1203:1205 1209 1210 1212:1214 1216 1220 1221 1223:1226 1228 1229 1231:1234 1237 1238 1240 1242 1243 1245 1246 1250 1251 1254 1255 1257:1259 1263 1264 1266:1268 1270 1271 1273:1275 1277 1281 1282 1285 1286 1288 1291 1292 1294:1297 1299 1300 1302 1303 1307 1308 1310:1312 1314 1318 1319 1321:1327 1329 1330 1332:1335 1338 1339 1341 1343 1345 1346 1348 1351 1352 1354 1355 1359 1360 1362:1368 1371 1372 1374:1376 1378 1379 1381:1384 1387 1388 1390:1392 1396 1397 1399 1401 1402 1404:1407 1410 1411 1413:1415 1419 1420 1422:1425 1427 1428 1430:1433 1435 1436 1438:1441 1444 1445 1447:1449 1451 1452 1454:1456 1460 1461 1463 1465 1466 1468 1470 1471 1473:1479 1482 1483 1485 1486 1488 1489 1492 1493 1495 1497 1498 1500:1503 1505 1506 1508 1509 1513 1514 1516:1518 1522 1523 1525 1528 1529 1531:1537 1539 1540 1542:1545 1547 1548 1550 1551 1555 1556 1558 1560 1562 1563 1565:1571 1574 1575 1577:1580 1582 1583 1585 1586 1590 1591 1593:1596 1598 1599 1601:1604 1606 1607 1609:1611 1615 1616 1618 1620 1622 1623 1625:1627 1629 1633 1634 1636:1638 1640 1644 1645 1647 1649 1651 1652 1654:1660 1663 1664 1666:1672 1675 1676 1678:1680 1684 1685 1688 1689 1691:1693 1695 1696 1699 1700 1702:1704 1708 1709 1712 1713 1715 1718 1719 1721:1723 1725 1726 1728:1734 1736 1737 1740 1741 1743:1746 1748:1752 1754 1755 1757:1760 1763 1764 1766 1767 1771 1772 1774:1777 1779 1780 1782:1785 1788 1789 1791:1793 1797 1798 1800:1803 1805:1809 1811 1812 1814:1820 1823 1824 1826:1828 1832 1833 1835 1836 1838 1840 1841 1843:1846 1848 1849 1851 1852 1854 1856 1857 1860 1861 1863 1864 1866 1867 1870 1871 1873 1876 1877 1879 1881 1883 1884 1886:1892 1895 1896 1898:1904 1906 1907 1909:1911 1913 1914 1916:1918 1922 1923 1925:1927 1931 1932 1934:1937 1939 1940 1942:1944 1946 1950 1951 1953 1956 1957 1959:1961 1963 1964 1966:1969 1972 1973 1975:1981 1984 1985 1987 1989 1990 1992:1998 2001 2002 2004 2005 2009 2010 2012 2014 2015 2017 2018 2022 2023 2025:2028 2030 2031 2033:2039 2042 2043 2045 2046 2050 2051 2053 2055 2056 2058:2061 2063 2064 2066 2067 2071 2072 2074 2075 2079 2080 2082:2085 2087 2088 2090 2091 2095 2096 2098 2099 2103 2104 2106:2109 2111 2112 2114:2116 2118 2119 2121:2124 2126 2127 2129 2131 2133 2134 2136:2138 2140 2144 2145 2147 2148 2152 2153 2155:2157 2161 2162 2164 2165 2169 2170 2172:2174 2178 2179 2181:2184 2187 2188 2190:2193 2195 2196 2198:2200 2204 2205 2207:2213 2216 2217 2219:2225 2228 2229 2231:2233 2237 2238 2240:2243 2246 2247 2249:2255 2257 2258 2260:2262 2266 2267 2269:2272 2274 2275 2277:2280 2282 2283 2285:2287 2291 2292 2294 2295 2299 2300 2302:2304 2306 2307 2309:2315 2317 2318 2320:2323 2326 2327 2329:2331 2335 2336 2338:2341 2344 2345 2347:2350 2353 2354 2356:2359 2362 2363 2365:2367 2369 2370 2372 2374 2376 2377 2379:2382 2384 2385 2387:2390 2393 2394 2396:2398 2402 2403 2405:2408 2410 2411 2413 2415 2416 2418 2420 2421 2423:2425 2429 2430 2432:2435 2437 2438 2440:2443 2445 2446 2448:2450 2452 2453 2455 2456 2460 2461 2463:2465 2469 2470 2472:2474 2478 2479 2481 2482 2486 2487 2489:2492 2494 2495 2497:2500 2503 2504 2507 2508 2510:2516 2519 2520 2522:2524 2526 2530 2531 2533:2535 2537 2538 2540 2542 2544 2545 2547 2550 2551 2553 2555 2557 2558 2561 2562 2564:2567 2570 2571 2573:2575 2577 2578 2580:2582 2586 2587 2589:2595 2597 2598 2600 2602 2604 2605 2607 2608 2612 2613 2615:2618 2620 2621 2623:2626 2629 2630 2632:2634 2636 2637 2639:2645 2648 2649 2651 2652 2654 2655 2658 2659 2661 2662 2666 2667 2669:2672 2674 2675 2677:2680 2683 2684 2686 2687 2691 2692 2694:2697 2699 2700 2702 2704 2706 2707 2709 2711 2712 2714:2716 2718 2722 2723 2725:2728 2731 2732 2734:2736 2740 2741 2743:2746 2748 2749 2751:2754 2756 2757 2759:2761 2765 2766 2768 2769 2773 2774 2776 2778 2779 2781:2783 2787 2788 2790:2793 2795 2796 2798:2801 2803 2804 2806 2807 2811 2812 2814:2816 2820 2821 2823:2826 2828 2829 2831 2833 2834 2836:2839 2842 2843 2845:2848 2850 2851 2853:2856 2858 2859 2861 2863 2865 2866 2868:2871 2873 2874 2876:2882 2885 2886 2888:2890 2894 2895 2897 2900 2901 2903 2906 2907 2909:2911 2915 2916 2918 2919 2923 2924 2926:2929 2931 2932 2934:2936 2940 2941 2943:2945 2949 2950 2952:2954 2958 2959 2961:2964 2966 2967 2969 2971 2973 2974 2976 2977 2981 2982 2984:2987 2989 2990 2992 2993 2997 2998 3000 3003 3004 3006:3008 3012 3013 3015:3018 3020 3021 3023 3025 3027 3028 3030:3032 3036 3037 3039:3041 3045 3046 3048:3050 3054 3055 3057:3060 3062 3063 3065 3067 3068 3070:3072 3076 3077 3079:3082 3084 3085 3087 3090 3091 3093 3094 3098 3099 3101:3104 3106 3107 3109:3112 3115 3116 3119 3120 3122:3128 3131 3132 3134 3136 3138 3139 3142 3143 3145 3147 3149 3150 3152 3153 3155 3156 3159 3160 3162 3163 3167 3168 3170:3173 3175 3176 3178 3181 3182 3184:3187 3189 3190 3192:3195 3198 3199 3201 3203 3204 3206:3209 3211 3212 3214 3215 3219 3220 3222:3225 3227 3228 3230:3233 3235 3236 3238:3241 3243 3244 3246 3247 3251 3252 3254:3256 3260 3261 3263:3266 3268 3269 3271:3274 3276:3280 3282 3283 3285 3286 3288 3289 3292 3293 3295 3297 3299 3300 3302 3303 3307 3308 3310 3311 3315 3316 3318 3319 3323 3324 3326:3328 3332 3333 3335:3338 3340 3341 3343 3345 3346 3348:3351 3353 3354 3356:3362 3364 3365 3367 3368 3372 3373 3375:3377 3379 3383 3384 3386:3389 3391 3392 3394 3396 3397 3399:3402 3404 3405 3407:3409 3411 3412 3414:3416 3418 3419 3421 3423 3424 3426 3428 3429 3431:3433 3435 3436 3438 3439 3443 3444 3446:3449 3451 3452 3454 3457 3458 3460 3462 3463 3465:3467 3471 3472 3474 3476 3477 3479:3481 3485 3486 3488:3491 3493 3494 3496:3498 3500 3501 3503 3505 3507 3508 3510 3512 3514 3515 3517:3520 3522 3523 3525:3527 3529 3530 3532 3533 3537 3538 3540 3541 3545 3546 3548:3554 3556 3557 3559:3562 3564 3565 3567:3570 3572 3573 3575 3578 3579 3581:3583 3585 3586 3588:3590 3592 3593 3595:3597 3599 3600 3602:3605 3608 3609 3611:3613 3615 3619 3620 3622 3625 3626 3628:3634 3636 3637 3639:3642 3644 3645 3647:3649 3653 3654 3656 3659 3660 3662:3665 3667 3668 3670:3673 3676 3677 3679:3681 3683 3684 3686:3689 3691 3692 3694 3695 3699 3700 3702 3704 3705 3707:3710 3712 3713 3715:3718 3720 3721 3723:3726 3729 3730 3732:3735 3738 3739 3741:3747 3750 3751 3754 3755 3757:3760 3762 3763 3765:3767 3769 3770 3772 3773 3777 3778 3780 3781 3785 3786 3788:3791 3793 3794 3796:3799 3801 3802 3804:3807 3809 3810 3812:3814 3818 3819 3821:3824 3826 3827 3829 3831 3832 3834:3836 3838 3842 3843 3845:3847 3851 3852 3854:3857 3860 3861 3863 3864 3868 3869 3871 3874 3875 3877 3879 3880 3882 3883 3887 3888 3890 3892 3893 3895:3897 3901 3902 3904:3907 3910 3911 3913 3914 3916 3918 3919 3921:3924 3926 3927 3929 3930 3934 3935 3937:3939 3943 3944 3946 3947 3949 3951 3952 3954:3956 3960 3961 3963:3966 3969 3970 3972:3974 3976 3980 3981 3983 3984 3988 3989 3991:3993 3995 3999 4000 4002:4004 4008 4009 4011 4013 4015 4016 4018 4019 4023 4024 4026:4028 4032 4033 4035:4037 4039 4043 4044 4046:4049 4051 4052 4054:4056 4060 4061 4063:4065 4069 4070 4072:4075 4077 4078 4080:4083 4085 4086 4088 4090 4091 4093 4095 4097 4098 4100 4102 4104 4105 4108 4109 4111 4113 4114 4116:4118 4122 4123 4125 4126 4130 4131 4133 4135 4136 4138:4141 4144 4145 4147:4153 4156 4157 4159:4162 4164 4165 4167:4170 4172 4173 4175:4177 4181 4182 4184:4187 4190 4191 4193:4196 4198 4199 4201:4204 4207 4208 4210:4213 4215 4216 4218 4219 4221 4222 4225 4226 4228 4229 4233 4234 4236 4237 4239 4241 4242 4244:4246 4250 4251 4253:4255 4259 4260 4263 4264 4266:4269 4272 4273 4275 4278 4279 4281:4284 4286 4287 4289:4295 4298 4299 4301 4304 4305 4307:4310 4312 4313 4315:4317 4321 4322 4324 4326 4327 4329:4332 4334 4335 4337:4339 4341 4342 4344:4347 4349 4350 4352:4354 4358 4359 4361 4362 4366 4367 4369:4372 4374 4375 4377:4380 4382 4383 4385 4386 4390 4391 4393 4394 4398 4399 4401:4403 4405 4406 4408:4414 4416 4417 4419 4420 4424 4425 4427:4433 4436 4437 4439:4441 4445 4446 4448:4450 4452 4453 4455 4456 4460 4461 4463 4464 4466 4467 4470 4471 4473:4476 4478 4479 4481:4484 4486 4487 4489:4491 4493 4494 4496:4498 4500 4504 4505 4507 4510 4511 4513:4515 4517 4518 4520 4523 4524 4526:4532 4534 4535 4537 4538 4542 4543 4545 4546 4550 4551 4553 4556 4557 4559:4565 4567 4568 4570 4571 4575 4576 4578 4579 4583 4584 4586:4589 4592 4593 4595:4597 4599 4600 4602:4605 4607 4608 4610:4612 4614 4615 4617:4620 4623 4624 4626:4628 4632 4633 4635:4637 4641 4642 4644:4646 4650 4651 4653 4655 4656 4658 4661 4662 4664:4667 4670 4671 4673:4676 4679 4680 4683 4684 4686 4687 4691 4692 4694:4696 4698 4702 4703 4705 4707 4709 4710 4712:4714 4716 4717 4719:4725 4727 4728 4730:4732 4736 4737 4739:4745 4748 4749 4751:4754 4756 4757 4759 4762 4763 4765 4768 4769 4771 4774 4775 4777 4778 4782 4783 4785 4788 4789 4791:4794 4797 4798 4800:4803 4805 4806 4808 4811 4812 4814:4820 4823 4824 4826:4828 4832 4833 4835 4837 4839 4840 4842:4848 4850 4851 4853:4856 4859 4860 4862:4865 4868 4869 4871 4872 4874 4875 4878 4879 4881:4884 4886 4887 4889:4892 4894 4895 4897 4898 4902 4903 4905:4908 4910 4911 4913 4915 4916 4918:4921 4924 4925 4928 4929 4931 4933 4934 4937 4938 4940:4942 4944 4948 4949 4951:4954 4956 4957 4959 4962 4963 4965:4968 4971 4972 4974 4976 4978 4979 4981:4984 4987 4988 4990:4993 4996 4997 4999:5001 5005 5006 5008:5014 5017 5018 5020:5023 5025 5026 5028:5031 5033 5034 5036:5038 5042 5043 5045:5047 5051 5052 5054:5056 5058 5062 5063 5065 5066 5070 5071 5073:5076 5078 5079 5081 5082 5086 5087 5089:5091 5093 5097 5098 5100:5106 5108 5109 5111 5114 5115 5117:5119 5121 5122 5124:5126 5130 5131 5133:5136 5139 5140 5142 5143 5147 5148 5150:5156 5158 5159 5161:5164 5166 5167 5169 5170 5174 5175 5177:5179 5181 5185 5186 5188 5189 5193 5194 5196:5199 5201 5202 5204:5206 5208 5209 5211 5212 5216 5217 5219 5221 5223 5224 5226:5228 5230 5234 5235 5237:5243 5246 5247 5249 5251 5252 5254 5256 5258 5259 5261:5263 5265 5269 5270 5273 5274 5276:5279 5281 5282 5284 5285 5287 5289 5290 5292 5293 5297 5298 5300:5303 5305 5306 5308:5311 5313 5314 5316:5318 5320 5324 5325 5327 5330 5331 5333:5339 5342 5343 5345:5351 5353 5354 5356:5358 5360 5364 5365 5367:5369 5371 5372 5374 5375 5379 5380 5382 5383 5387 5388 5390:5393 5395 5396 5398 5399 5403 5404 5406:5408 5410 5411 5413 5415 5416 5418:5420 5422 5423 5425:5428 5431 5432 5434 5437 5438 5440:5443 5445 5446 5448 5449 5453 5454 5457 5458 5461 5462 5464:5470 5472 5473 5475 5477 5479 5480 5482 5485 5486 5488:5494 5496 5497 5499:5502 5504 5505 5507:5509 5511 5515 5516 5518:5520 5522 5526 5527 5529:5532 5535 5536 5538:5541 5543:5547 5549 5550 5552:5555 5558 5559 5561:5567 5569 5570 5572 5574 5575 5577:5580 5583 5584 5586 5588 5589 5591:5593 5595 5599 5600 5602 5603 5607 5608 5610 5612 5613 5616 5617 5619:5625 5628 5629 5631:5634 5637 5638 5640 5641 5643 5644 5647 5648 5650 5651 5653 5654 5657 5658 5660 5662 5663 5665:5667 5671 5672 5674 5675 5679 5680 5682 5684 5685 5687:5690 5692 5693 5695:5698 5700 5701 5703:5706 5708 5709 5711 5713 5714 5716 5717 5721 5722 5724 5726 5727 5729 5730 5734 5735 5737:5743 5745 5746 5748:5751 5753 5754 5756:5762 5764 5765 5767:5770 5773 5774 5776:5778 5782 5783 5785:5788 5790:5794 5796 5797 5799:5802 5805 5806 5808:5811 5814 5815 5817:5820 5822 5823 5825 5826 5830 5831 5833:5836 5839 5840 5842 5844 5845 5847 5849 5850 5852 5854 5855 5857:5859 5861 5862 5864 5865 5867 5869 5870 5872:5874 5878 5879 5881 5882 5886 5887 5889:5891 5895 5896 5898 5899 5901 5903 5904 5906:5912 5914 5915 5917 5918 5920 5922 5923 5925:5927 5929 5930 5932:5934 5938 5939 5941:5944 5946 5947 5949:5951 5955 5956 5958 5960 5962 5963 5965:5967 5971 5972 5974:5976 5980 5981 5983:5985 5989 5990 5992:5998 6001 6002 6004:6007 6010 6011 6013:6015 6019 6020 6022:6025 6027 6028 6030:6036 6038 6039 6041:6044 6046 6047 6049 6051 6053 6054 6056:6058 6060 6061 6063 6064 6066 6067 6070 6071 6073:6075 6079 6080 6082:6085 6087 6088 6090 6092 6093 6095 6096 6098 6099 6102 6103 6105:6108 6110 6111 6113:6116 6119 6120 6122 6123 6127 6128 6130:6136 6138 6139 6141 6143 6144 6146 6147 6151 6152 6154:6160 6163 6164 6166 6168 6169 6171:6177 6180 6181 6183 6186 6187 6189 6190 6192 6193 6196 6197 6199:6201 6203 6207 6208 6210:6212 6214 6215 6217 6218 6222 6223 6225:6228 6231 6232 6234:6237 6240 6241 6243:6245 6247 6248 6250 6251 6255 6256 6258:6260 6262 6266 6267 6269:6271 6275 6276 6278:6281 6283 6284 6286:6289 6291 6292 6294 6295 6299 6300 6302 6303 6307 6308 6310 6312 6314 6315 6317:6320 6322 6323 6325:6331 6334 6335 6337 6340 6341 6343 6345 6347 6348 6350:6352 6354 6358 6359 6361:6364 6367 6368 6370 6371 6375 6376 6378 6380 6381 6383:6386 6389 6390 6393 6394 6396 6397 6401 6402 6404 6406 6408 6409 6411:6414 6416 6417 6419:6422 6424 6425 6427:6429 6431 6432 6434 6435 6439 6440 6442 6443 6447 6448 6450:6453 6455 6456 6458 6459 6463 6464 6467 6468 6470:6473 6475 6476 6478:6484 6487 6488 6490 6491 6495 6496 6498 6500 6501 6503 6505 6506 6508 6509 6513 6514 6516 6517 6521 6522 6524:6527 6530 6531 6533:6536 6538 6539 6541 6543 6544 6546 6548 6549 6551:6554 6556 6557 6559:6562 6564 6565 6567 6568 6572 6573 6575 6577 6578 6580 6583 6584 6586:6588 6590 6591 6593:6595 6599 6600 6602:6605 6608 6609 6611:6614 6616 6617 6619:6622 6624 6625 6627 6628 6630 6632 6633 6635:6641 6644 6645 6647 6648 6650 6651 6654 6655 6657 6658 6660 6661 6664 6665 6667 6668 6672 6673 6675:6677 6679 6680 6682:6684 6688 6689 6691 6693 6695 6696 6698:6704 6707 6708 6710:6712 6716 6717 6719:6722 6725 6726 6728:6731 6733 6734 6736:6739 6742 6743 6745:6748 6750 6751 6753:6756 6758 6759 6761 6762 6764 6766 6767 6769:6771 6775 6776 6778:6780 6784 6785 6787:6793 6796 6797 6800 6801 6803 6804 6808 6809 6811:6813 6817 6818 6820:6823 6826 6827 6829 6830 6834 6835 6837:6839 6841 6842 6844:6847 6849 6850 6852:6858 6861 6862 6864 6866 6867 6869:6875 6878 6879 6881:6887 6890 6891 6893 6895 6896 6898:6900 6904 6905 6907 6909 6911 6912 6915 6916 6918 6919 6923 6924 6926:6932 6935 6936 6938 6940 6941 6943 6945 6947 6948 6950:6953 6956 6957 6959:6965 6968 6969 6971 6974 6975 6977:6980 6983 6984 6986 6988 6989 6991 6993 6994 6996 6997 7001 7002 7005 7006 7008:7010 7012 7013 7015:7017 7019 7020 7022:7025 7027 7028 7030 7032 7033 7035:7038 7041 7042 7044:7047 7049 7050 7052:7055 7058 7059 7061:7067 7070 7071 7073:7079 7082 7083 7086 7087 7089 7090 7094 7095 7097 7099 7100 7102:7105 7107 7108 7110 7111 7115 7116 7118 7120 7121 7123 7124 7126 7127 7130 7131 7133:7136 7138 7139 7141 7142 7146 7147 7149:7152 7154 7155 7157 7159 7161 7162 7164 7165 7169 7170 7172 7173 7177 7178 7180:7186 7189 7190 7192:7194 7196 7197 7199 7200 7204 7205 7207 7210 7211 7213 7215 7216 7218 7219 7223 7224 7226:7229 7232 7233 7235:7237 7239 7240 7242:7244 7246 7247 7249:7252 7255 7256 7258:7261 7263 7264 7266 7269 7270 7272:7275 7277 7278 7280:7283 7286 7287 7289:7291 7293 7294 7296:7302 7305 7306 7308:7310 7312 7316 7317 7319:7325 7327 7328 7330 7331 7335 7336 7338:7340 7342 7343 7345:7351 7354 7355 7357:7360 7362 7363 7365 7366 7370 7371 7373 7374 7378 7379 7382 7383 7385:7387 7389 7390 7392:7398 7401 7402 7404:7407 7410 7411 7413:7419 7421 7422 7424:7426 7428 7429 7431 7433 7435 7436 7438:7440 7442 7443 7445:7448 7451 7452 7454 7455 7459 7460 7462:7465 7467 7468 7470 7471 7475 7476 7478:7480 7482 7483 7485:7488 7490 7491 7493:7496 7499 7500 7502:7505 7508 7509 7511 7513 7514 7516 7518 7519 7521:7527 7530 7531 7533:7539 7542 7543 7545:7547 7551 7552 7554:7556 7558 7559 7561 7562 7566 7567 7569 7572 7573 7575 7577 7578 7580 7582 7583 7585:7591 7594 7595 7597:7599 7603 7604 7606 7608 7609 7611 7613 7614 7616:7619 7622 7623 7625 7627 7628 7630:7633 7635 7636 7638:7641 7644 7645 7647 7649 7650 7652:7655 7657 7658 7660 7663 7664 7666 7667 7671 7672 7674:7676 7680 7681 7683 7685 7686 7688:7690 7694 7695 7697:7703 7705 7706 7708:7711 7713 7714 7716 7718 7719 7721 7724 7725 7727:7733 7735 7736 7738:7744 7747 7748 7750 7751 7755 7756 7758 7759 7763 7764 7766 7767 7771 7772 7774:7777 7779 7780 7782:7785 7787 7788 7790:7793 7796 7797 7799:7802 7804 7805 7807 7808 7812 7813 7816 7817 7819:7821 7825 7826 7828:7831 7833 7834 7836:7842 7845 7846 7848:7850 7852 7856 7857 7859:7861 7863 7864 7866:7869 7871 7872 7875 7876 7878:7880 7898 7899 7901 7902 7906 7907 7909:7912 7914 7915 7917:7920 7922 7923 7925 7926 7941 7942 7944:7947 7958 7959 7961:7963 7965 7966 7968 7969 7973 7974 7976 7977 7979 7981 7982 7984:7987 7989 7990 7992 7993 7997 7998 8000:8003 8005 8006 8008 8010 8012 8013 8015:8021 8024 8025 8027:8029 8031 8035 8036 8038:8040 8044 8045 8047:8053 8056 8057 8059:8062 8064 8065 8067:8069 8073 8074 8076 8077 8081 8082 8084 8085 8087 8089 8090 8092 8093 8097 8098 8100 8101 8105 8106 8108 8110 8111 8113:8115 8117 8121 8122 8124:8126 8128 8129 8131:8133 8146 8147 8149:8152 8154 8155 8157:8160 8162 8163 8165:8168 8171 8172 8174 8176 8178 8179 8181:8184 8186 8187 8189 8191 8192 8194 8197 8198 8200 8202 8203 8205 8207 8209 8210 8212:8214 8218 8219 8221 8224 8225 8227:8230 8232 8233 8235:8238 8241 8242 8244:8247 8250 8251 8253:8259 8262 8263 8265 8268 8269 8271 8273 8275 8276 8278 8279 8283 8284 8286:8289 8291 8292 8294:8297 8299 8300 8303 8304 8306 8307 8311 8312 8314:8317 8319 8320 8322:8328 8331 8332 8334:8336 8340 8341 8343:8345 8347 8348 8350 8352 8353 8355 8358 8359 8361 8363 8364 8366:8369 8372 8373 8375 8377 8378 8380:8382 8384 8385 8387:8389 8393 8394 8396:8399 8401 8402 8404:8407 8409 8410 8412 8414 8415 8417 10730:10732}); color atoms translucent 0.875 [xfa8072]; select ({7882 7883 7885 7886 7890 7891 7893 7894 7930 7931 7933:7935 7937 7949 7950 7952:7954 8135 8136 8138:8140 8142 10565 10566 10568 10570 10571 10573 10576 10578:10580 10585 10586 10588 10590 10591 10593 10596 10598:10600 10605 10606 10608 10610 10611 10613 10615 10616 10619 10622 10627 10628 10630 10632 10633 10635 10637 10638 10641 10644 10649 10650 10652 10654 10655 10657 10659 10660 10663 10666 10671 10672 10674 10676 10677 10679 10682 10684:10686}); Spacefill 0.2925; select ({10581 10601 10623 10645 10667}); Spacefill 0.312; select ({0:7880 7897:7928 7940:7947 7957:8133 8145:10563 10687:10762 10764:10815 10817:10822}); Spacefill 0; select ({9964 9965 9967 9969 9970 9972 9975 9977:9979 9983 9984 9986 9988 9989 9991 9994 9996:9999 10003 10004 10006 10008 10009 10011 10013 10014 10017 10019 10020 10024 10025 10027 10029 10030 10032 10035 10037:10039 10043 10044 10046 10048 10049 10051 10054 10056:10058 10062 10063 10065 10067 10068 10070 10073 10075:10077 10081 10082 10084 10086 10087 10089 10091 10092 10095 10097 10098 10102 10103 10105 10107 10108 10110 10112 10113 10116 10118 10119 10123 10124 10126 10128 10129 10131 10133 10134 10137 10140 10141 10145 10146 10148 10150 10151 10153 10156 10158:10160 10164 10165 10167 10169 10170 10172 10175 10177:10180 10187:10190 10193 10194 10197:10200 10203 10204 10207:10210 10215 10216 10219:10222 10229:10232 10235 10236 10239:10242 10245 10246 10249:10252 10257 10258 10261:10263 10267 10268 10270 10272 10273 10275 10277 10278 10281 10284 10285 10289 10290 10292 10294 10295 10297 10300 10302:10304 10308 10309 10311 10313 10314 10316 10318 10319 10322 10325 10326 10330 10331 10333 10335 10336 10338 10341 10343:10345 10349 10350 10352 10354 10355 10357 10359 10360 10363 10365 10366 10370 10371 10373 10375 10376 10378 10381 10383:10385 10389 10390 10392 10394 10395 10397 10400 10402:10404 10408 10409 10411 10413 10414 10416 10419 10421:10424 10428 10429 10431 10433 10434 10436 10438 10439 10442 10444 10445 10449 10450 10452 10454 10455 10457 10459 10460 10463 10465 10466 10470 10471 10473 10475 10476 10478 10481 10483:10486 10490 10491 10493 10495 10496 10498 10501 10503:10506 10510 10511 10513 10515 10516 10518 10521 10523:10526 10530 10531 10533 10535 10536 10538 10541 10543:10545 10549 10550 10552 10554 10555 10557 10560 10562 10563}); color atoms translucent 0.625 cpk; select ({7882 7883 7885 7886 7890 7891 7893 7894 7930 7931 7933:7935 7937 7949 7950 7952:7954 8135 8136 8138:8140 8142}); color atoms opaque [xfa8072]; select ({7884 7887 7892 7895 7932 7951 7955 7956 8137 10564 10567 10569 10574 10577 10582:10584 10587 10589 10594 10597 10602:10604 10607 10609 10617 10624:10626 10629 10631 10639 10646:10648 10651 10653 10661 10668:10670 10673 10675 10680 10683 10763 10816}); Spacefill 0.255; select BONDS ({0:8047 8063:8095 8106:8114 8117 8124:8304 8315:10993 11118 11132:11179}); wireframe 0; select BONDS ({8048:8062 8096:8105 8115 8116 8118:8123 8305:8314 10994:11117 11119:11131}); wireframe 0.16; select ({7885 7893 7935 7950 8138 10581 10601 10623 10645 10667 10687 10708}); label "%n %r"; select ({7950 8138}); set labelOffset 4 -4; select ({7885 7893 7935}); set labelOffset -4 -4; select ({10581 10601 10623 10645 10667 10687 10708}); set labelOffset 4 4; measures delete; measure ({7955}) ({8144}); # distance 2.78 "2.78 \u00c5" [GLU]993:A.OE1 #7956 [ARG]1015:A.NH2 #8145; measure ({7956}) ({8141}); # distance 2.92 "2.92 \u00c5" [GLU]993:A.OE2 #7957 [ARG]1015:A.NE #8142; measure ({10617}) ({8143}); # distance 2.64 "2.64 \u00c5" [DG]3:D.O6 #10621 [ARG]1015:A.NH1 #8144; measure ({8143}) ({10639}); # distance 3.13 "3.13 \u00c5" [ARG]1015:A.NH1 #8144 [DG]4:D.O6 #10643; measure ({10614}) ({8144}); # distance 3.03 "3.03 \u00c5" [DG]3:D.N7 #10618 [ARG]1015:A.NH2 #8145; measure ({10636}) ({7888}); # distance 2.66 "2.66 \u00c5" [DG]4:D.N7 #10640 [ASN]985:A.ND2 #7889; measure ({7887}) ({10816}); # distance 3.04 "3.04 \u00c5" [ASN]985:A.OD1 #7888 [HOH]201:D.O #10821; measure ({7887}) ({10763}); # distance 2.66 "2.66 \u00c5" [ASN]985:A.OD1 #7888 [HOH]1217:A.O #10768; measure ({10658}) ({10816}); # distance 2.46 "2.46 \u00c5" [DG]5:D.N7 #10662 [HOH]201:D.O #10821; measure ({7896}) ({10816}); # distance 3.37 "3.37 \u00c5" [ASN]986:A.ND2 #7897 [HOH]201:D.O #10821; measure ({10816}) ({10661}); # distance 3.15 "3.15 \u00c5" [HOH]201:D.O #10821 [DG]5:D.O6 #10665; measure ({10816}) ({7939}); # distance 2.92 "2.92 \u00c5" [HOH]201:D.O #10821 [ARG]991:A.NH2 #7940; measure ({10816}) ({7936}); # distance 3.41 "3.41 \u00c5" [HOH]201:D.O #10821 [ARG]991:A.NE #7937; measure ({10816}) ({10763}); # distance 2.8 "2.8 \u00c5" [HOH]201:D.O #10821 [HOH]1217:A.O #10768; measure ({10763}) ({10661}); # distance 2.85 "2.85 \u00c5" [HOH]1217:A.O #10768 [DG]5:D.O6 #10665; select *; set measures angstroms; font measures 15 SansSerif Plain; select measures ({0:14}); measure "2:%VALUE %UNITS//angstroms"; select measures ({null}); select ({0:7880 7897:7928 7940:7947 7957:8133 8145:8417}); Cartoon on; select ({9963:10622 10645:10729}); Cartoon 0.2; set echo off; set echo bottom center; echo "5'-TTGGGT-3' PAM"; font echo 12 SansSerif Plain; color echo [xff0000]; color echo background [xffff00]; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-6.353999999999999 -5.495999999999995 31.704999999999984} {71.47 103.77 137.051} # volume = 895811.5212656639; if (reloadfile) { center {25.790666666666663 16.836444444444442 94.57366666666668}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {32.558 49.137 84.37799999999999} 72.19890133895704 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; } function _setSelectionState() { set hideNotSelected false; SelectionHalos OFF; } function _setState() { # initialize; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing false; SelectionHalos OFF; delay 1.0; moveto 1.0 { 466 -825 320 79.47} 813.71 -27.43 5.14 {25.790666666666663 16.836444444444442 94.57366666666668} 89.0701484399549 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false } set antialiasTranslucent true; set antialiasImages true; spin off; } _setState;