exit; # Jmol state version 14.28.4 2018-01-24 23:36; # fullName = "jmolApplet0__840742224555926__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=Alpha_helix&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 175; # height 350; stateVersion = 1428004; background [xffffff]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "abb78d56d3e07a4e0290a8783dcb8b58"); load /*file*/"/cgi-bin/getfrozenstructure?abb78d56d3e07a4e0290a8783dcb8b58"; loadedfileprev = "abb78d56d3e07a4e0290a8783dcb8b58"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsfancy false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees 5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:2191}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; data "connect_atoms" 1126 1097 10240 0.0 -2.901 hbond; 1135 1104 10240 0.0 -1.135 hbond; 1141 1111 10240 0.0 -0.6880000000000001 hbond; 1146 1120 10240 0.0 -1.565 hbond; 1153 1129 10240 0.0 -2.621 hbond; 1160 1138 10240 0.0 -1.625 hbond; 1165 1144 10240 0.0 -1.213 hbond; 1173 1149 10240 0.0 -1.462 hbond; 1187 1163 8192 0.0 -0.512 hbond; 1191 1168 8192 0.0 -1.096 hbond; 1215 1203 6144 0.0 -1.124 hbond; 1239 1210 10240 0.0 -2.102 hbond; 1246 1218 10240 0.0 -1.438 hbond; 1250 1225 10240 0.0 -1.359999999 hbond; 1254 1233 10240 0.0 -0.641 hbond; 1263 1242 10240 0.0 -1.581999999 hbond; 1268 1249 10240 0.0 -1.642 hbond; 1276 1253 10240 0.0 -0.874 hbond; 1280 1257 10240 0.0 -1.611 hbond; 1291 1266 10240 0.0 -1.513 hbond; 1299 1271 10240 0.0 -2.637 hbond; 1307 1279 10240 0.0 -0.847 hbond; 1314 1283 10240 0.0 -2.138 hbond; 1321 1294 10240 0.0 -2.051 hbond; 1354 1324 8192 0.0 -1.838 hbond; 1381 1357 8192 0.0 -1.92 hbond; 1392 1364 8192 0.0 -2.925 hbond; 1418 1395 8192 0.0 -0.542 hbond; 1441 1432 6144 0.0 -0.614 hbond; 1482 1458 10240 0.0 -1.651 hbond; 1489 1465 10240 0.0 -2.267 hbond; 1497 1472 10240 0.0 -0.648 hbond; 1532 1504 10240 0.0 -2.229 hbond; 1541 1512 10240 0.0 -1.729 hbond; 1546 1519 10240 0.0 -1.986 hbond; 1556 1528 10240 0.0 -2.423 hbond; 1560 1535 10240 0.0 -1.3940000000000001 hbond; 1569 1544 10240 0.0 -1.467 hbond; 1578 1549 10240 0.0 -3.118 hbond; 1585 1559 10240 0.0 -2.015 hbond; 1593 1563 10240 0.0 -2.08 hbond; 1597 1572 10240 0.0 -1.703 hbond; 1602 1581 10240 0.0 -1.577999999 hbond; 1613 1588 10240 0.0 -2.349 hbond; 1619 1596 10240 0.0 -2.394 hbond; 1627 1605 8192 0.0 -1.201 hbond; 1631 1616 8192 0.0 -1.216 hbond; 1631 1605 10240 0.0 -0.888 hbond; 1644 1630 8192 0.0 -0.896 hbond; 1670 1647 8192 0.0 -0.709 hbond; 1699 1673 10240 0.0 -0.665 hbond; 1706 1681 10240 0.0 -1.919 hbond; 1737 1709 10240 0.0 -1.613999999 hbond; 1743 1720 10240 0.0 -2.144 hbond; 1752 1725 10240 0.0 -2.445 hbond; 1760 1732 10240 0.0 -1.508 hbond; 1770 1740 10240 0.0 -1.643 hbond; 1776 1746 10240 0.0 -2.418 hbond; 1784 1755 10240 0.0 -1.052 hbond; 1793 1755 12288 0.0 -1.5270000000000001 hbond; 1811 1763 4096 0.0 -2.355 hbond; 1842 1821 8192 0.0 -2.275 hbond; 1850 1829 8192 0.0 -0.596 hbond; 1861 1829 10240 0.0 -0.875 hbond; 1861 1836 8192 0.0 -0.678 hbond; 1872 1836 10240 0.0 -1.69 hbond; 1880 1845 10240 0.0 -2.735999999 hbond; 1888 1853 10240 0.0 -1.5750000000000002 hbond; 1892 1864 10240 0.0 -1.426 hbond; 1900 1875 10240 0.0 -0.76 hbond; 1907 1883 10240 0.0 -1.288 hbond; 1915 1891 10240 0.0 -0.864 hbond; 1922 1895 10240 0.0 -0.736 hbond; 1928 1903 10240 0.0 -1.881 hbond; 1935 1910 10240 0.0 -1.376 hbond; 1943 1918 10240 0.0 -1.296 hbond; 1948 1925 10240 0.0 -2.07 hbond; 1958 1931 10240 0.0 -2.09 hbond; 1968 1938 10240 0.0 -1.951 hbond; 1979 1946 10240 0.0 -1.226 hbond; 1992 1971 8192 0.0 -2.034 hbond; 2001 1982 8192 0.0 -1.158 hbond; 2012 1995 6144 0.0 -2.097 hbond; 2033 2015 8192 0.0 -2.777 hbond; 2040 2015 10240 0.0 -2.209 hbond; 2049 2022 10240 0.0 -1.986 hbond; 2054 2029 10240 0.0 -0.735 hbond; 2059 2036 10240 0.0 -1.4100000000000001 hbond; 2071 2043 10240 0.0 -1.995 hbond; 2080 2052 10240 0.0 -1.084 hbond; 2089 2057 10240 0.0 -1.589 hbond; 2096 2062 10240 0.0 -2.784 hbond; 2103 2074 10240 0.0 -1.336 hbond; 2108 2083 10240 0.0 -1.077 hbond; 2112 2092 10240 0.0 -1.955 hbond; 2119 2099 10240 0.0 -2.103 hbond; 2124 2106 10240 0.0 -1.574 hbond; 2132 2111 10240 0.0 -1.43 hbond; 2137 2115 10240 0.0 -2.604 hbond; 2145 2122 10240 0.0 -0.968 hbond; 2150 2127 10240 0.0 -0.577 hbond; 2169 2148 8192 0.0 -1.225 hbond; 41 18 10240 0.0 -0.955 hbond; 50 24 10240 0.0 -1.787 hbond; 57 31 10240 0.0 -2.189 hbond; 65 36 10240 0.0 -2.017 hbond; 72 44 10240 0.0 -2.174 hbond; 81 53 10240 0.0 -2.001 hbond; 86 60 10240 0.0 -1.238 hbond; 91 68 10240 0.0 -1.9020000000000001 hbond; 105 75 10240 0.0 -0.515 hbond; 109 84 10240 0.0 -0.884 hbond; 125 94 10240 0.0 -2.033 hbond; 129 121 6144 0.0 -0.523 hbond; 134 121 8192 0.0 -3.055 hbond; 162 137 10240 0.0 -2.918 hbond; 174 147 10240 0.0 -1.321 hbond; 178 152 10240 0.0 -1.282 hbond; 183 156 10240 0.0 -1.505 hbond; 192 165 10240 0.0 -1.984 hbond; 197 177 10240 0.0 -1.172 hbond; 205 181 10240 0.0 -1.413 hbond; 214 186 10240 0.0 -1.945 hbond; 225 195 10240 0.0 -1.427 hbond; 233 200 10240 0.0 -2.526 hbond; 244 208 10240 0.0 -1.956 hbond; 252 217 10240 0.0 -1.883 hbond; 258 228 10240 0.0 -2.605 hbond; 283 261 8192 0.0 -3.355 hbond; 290 272 8192 0.0 -1.669 hbond; 299 279 8192 0.0 -0.8290000000000001 hbond; 306 286 8192 0.0 -1.147 hbond; 318 293 8192 0.0 -2.524 hbond; 346 321 8192 0.0 -1.074 hbond; 393 376 8192 0.0 -1.558 hbond; 413 396 8192 0.0 -1.078 hbond; 420 396 10240 0.0 -1.884 hbond; 429 402 10240 0.0 -2.61 hbond; 433 407 10240 0.0 -1.3780000000000001 hbond; 443 416 10240 0.0 -1.795 hbond; 447 423 10240 0.0 -0.961 hbond; 456 432 10240 0.0 -1.389 hbond; 465 436 10240 0.0 -2.13 hbond; 472 446 10240 0.0 -1.87 hbond; 477 450 10240 0.0 -1.718 hbond; 485 459 10240 0.0 -1.04 hbond; 490 468 10240 0.0 -1.292 hbond; 498 475 10240 0.0 -1.976 hbond; 505 480 10240 0.0 -1.847999999 hbond; 513 488 10240 0.0 -1.33 hbond; 518 493 10240 0.0 -1.724 hbond; 525 501 10240 0.0 -1.7570000000000001 hbond; 530 508 10240 0.0 -0.502 hbond; 540 521 8192 0.0 -0.8140000000000001 hbond; 555 533 8192 0.0 -2.451 hbond; 578 558 8192 0.0 -0.601 hbond; 586 558 10240 0.0 -1.674 hbond; 591 566 10240 0.0 -2.01 hbond; 599 581 8192 0.0 -0.897 hbond; 618 594 10240 0.0 -1.937 hbond; 624 602 10240 0.0 -2.652 hbond; 632 608 10240 0.0 -2.051 hbond; 640 613 10240 0.0 -2.082 hbond; 650 621 10240 0.0 -1.767 hbond; 655 627 10240 0.0 -1.843999999 hbond; 665 635 10240 0.0 -2.419 hbond; 674 635 12288 0.0 -1.242999999 hbond; 682 643 12288 0.0 -3.011 hbond; 722 703 8192 0.0 -2.056 hbond; 730 711 8192 0.0 -0.981 hbond; 750 718 10240 0.0 -0.642 hbond; 758 725 10240 0.0 -1.732 hbond; 766 733 10240 0.0 -2.078 hbond; 772 744 10240 0.0 -1.038 hbond; 782 753 10240 0.0 -1.157 hbond; 788 761 10240 0.0 -1.524 hbond; 796 769 10240 0.0 -1.601999999 hbond; 804 775 10240 0.0 -2.472 hbond; 811 785 10240 0.0 -1.8010000000000002 hbond; 818 791 10240 0.0 -2.366 hbond; 826 799 10240 0.0 -1.992 hbond; 831 807 10240 0.0 -1.358 hbond; 836 821 8192 0.0 -1.091 hbond; 846 821 10240 0.0 -1.141 hbond; 866 849 8192 0.0 -1.565 hbond; 875 849 10240 0.0 -1.335 hbond; 886 869 6144 0.0 -3.075 hbond; 912 889 10240 0.0 -4.573 hbond; 922 896 10240 0.0 -1.842 hbond; 927 903 10240 0.0 -1.155 hbond; 933 908 10240 0.0 -2.213 hbond; 941 915 10240 0.0 -1.888 hbond; 949 925 10240 0.0 -2.227 hbond; 958 930 10240 0.0 -1.839 hbond; 969 936 10240 0.0 -2.815 hbond; 977 944 10240 0.0 -1.726 hbond; 982 952 10240 0.0 -0.9470000000000001 hbond; 988 961 10240 0.0 -2.027 hbond; 995 972 10240 0.0 -2.01 hbond; 1001 980 10240 0.0 -1.42 hbond; 1008 985 10240 0.0 -1.734999999 hbond; 1015 991 10240 0.0 -2.362 hbond; 1023 998 10240 0.0 -1.046 hbond; 1030 1004 10240 0.0 -0.65 hbond; 1045 1026 8192 0.0 -1.145 hbond; end "connect_atoms"; select ({37 45 54 61 69 76 85 90 95}); color atoms opaque [x696969]; select ({33 41 50 57 65 72 81 86 91 105}); Spacefill 0.4625; select ({36 44 53 60 68 75 84 89 94 108}); Spacefill 0.425; select ({34 35 37 42 43 45 51 52 54 58 59 61 66 67 69 73 74 76 82 83 85 87 88 90 92 93 95 106 107}); Spacefill 0.4875; select ({0:32 38:40 46:49 55 56 62:64 70 71 77:80 96:104 109:2191}); color atoms opaque chain; select ({0:32 38:40 46:49 55 56 62:64 70 71 77:80 96:104 109:2277}); Spacefill 0; select BONDS ({0:33 38:40 47:50 55 56 61 63 64 71 72 78:81 97:107 110 112:2556}); wireframe 0; select BONDS ({34:37 41:46 51:54 57:60 62 65:70 73:77 82:96 108 109 111}); wireframe 0.36; set echo off; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-10.097000000000001 -26.243 -26.649} {34.139 27.682 30.455} # volume = 136217.3834352; if (reloadfile) { center {21.100638888888884 17.22586111111111 0.6163611111111112}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {12.021 0.7195 1.9029999999999987} 33.78985923967105 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({37 45 54 61 69 76 85 90 95}); set hideNotSelected false; } function _setState() { # initialize; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing false; SelectionHalos OFF; delay 1.0; moveto 1.0 { 709 586 -392 166.85} 615.29 0.0 0.0 {21.100638888888884 17.22586111111111 0.6163611111111112} 48.07573928433899 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false } set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;