exit; # BEGINOFOPTIONS # Options for the scene # caption: NMR structure of proinsulin, 20 models. Chains B, C, and A are show as green, gray and orange alpha-carbon trace. Disulfide links are sketched in yellow. # captionBgColor: white # captionFontColor: black # spinState: on # doModelReload: false # savePSpeed: -1 # killMove: 1 # killZoom: 1 # animationDirection: 0 # animationMode: PALINDROME # loopPause: 1 # ENDOFOPTIONS # Jmol state version 14.29.16 2018-06-03 23:13; # fullName = "jmolApplet0__7395607326668177__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Karsten_Theis/Insulin&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1429016; background [x000000]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set specularExponent 6; set celShading false; set celShadingPower 10; set zShadePower 3; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Auto; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "https://files.rcsb.org/download/%FILE.pdb"; # set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif"; # set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true"; # set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; set bondingVersion 0; set legacyAutoBonding false; set legacyAutoBonding false; set legacyHAddition false; set legacyJavaFloat false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set multipleBondBananas false; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "c6d5c9b879b8d9ac872a6b8043ac4284"); load /*file*/"/cgi-bin/getfrozenstructure?c6d5c9b879b8d9ac872a6b8043ac4284"; loadedfileprev = "c6d5c9b879b8d9ac872a6b8043ac4284"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "once"; set appletproxy ""; set applysymmetrytobonds false; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesoffset 0.0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonblockheight 0.5; set cartoonblocks false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsteps false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsbackbone false; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hiddenlinesdashed false; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set hoverdelay 0.5; set infofontsize 20; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set jmolinjspecview true; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondbananas false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nbocharges true; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmodulationvectors false; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set tracealpha true; set translucent true; set twistedsheets false; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vectortrail 0; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:25739}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; select ({953:1286 2240:2573 3527:3860 4814:5147 6101:6434 7388:7721 8675:9008 9962:10295 11249:11582 12536:12869 13823:14156 15110:15443 16397:16730 17684:18017 18971:19304 20258:20591 21545:21878 22832:23165 24119:24452 25406:25739}); color atoms opaque [x008000]; select ({468:952 1755:2239 3042:3526 4329:4813 5616:6100 6903:7387 8190:8674 9477:9961 10764:11248 12051:12535 13338:13822 14625:15109 15912:16396 17199:17683 18486:18970 19773:20257 21060:21544 22347:22831 23634:24118 24921:25405}); color atoms opaque [x808080]; select ({0:467 1287:1754 2574:3041 3861:4328 5148:5615 6435:6902 7722:8189 9009:9476 10296:10763 11583:12050 12870:13337 14157:14624 15444:15911 16731:17198 18018:18485 19305:19772 20592:21059 21879:22346 23166:23633 24453:24920}); color atoms opaque [xffa500]; select ({0:25739}); Spacefill 0; select BONDS ({0:59}); color bonds opaque [xffff30]; select BONDS ({60:25999}); wireframe 0; select BONDS ({0:59}); wireframe 0.2; Backbone ({0:1271 1287:2558 2574:3845 3861:5132 5148:6419 6435:7706 7722:8993 9009:10280 10296:11567 11583:12854 12870:14141 14157:15428 15444:16715 16731:18002 18018:19289 19305:20576 20592:21863 21879:23150 23166:24437 24453:25724}); Backbone on; set echo off; set echo ID "simplemodel" [0 100%]; echo "Displaying simplified model"; font echo 22 SansSerif Plain; color echo [xffa500]; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setFrameState() { # frame state; # modelCount 20; # first 1.1; # last 1.20; frame RANGE 1.1 1.20; animation DIRECTION +1; animation FPS 10; animation MODE PALINDROME 1.0 1.0; frame *; animation OFF; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {-25.192999999999998 -25.129999999999995 -28.788000000000004} {13.015 35.925 12.088000000000001} # volume = 95355.10114943999; if (reloadfile) { center {-3.5188652173913 -1.6930804347826083 -6.2631076086956385}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {-6.089 5.397499999999999 -8.350000000000001} 36.285424115514324 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; spin axisangle {0.0 1.0 0.0} 10.0; } function _setSelectionState() { select ({110 285 1056 1066 1120 1267 1397 1572 2343 2353 2407 2554 2684 2859 3630 3640 3694 3841 3971 4146 4917 4927 4981 5128 5258 5433 6204 6214 6268 6415 6545 6720 7491 7501 7555 7702 7832 8007 8778 8788 8842 8989 9119 9294 10065 10075 10129 10276 10406 10581 11352 11362 11416 11563 11693 11868 12639 12649 12703 12850 12980 13155 13926 13936 13990 14137 14267 14442 15213 15223 15277 15424 15554 15729 16500 16510 16564 16711 16841 17016 17787 17797 17851 17998 18128 18303 19074 19084 19138 19285 19415 19590 20361 20371 20425 20572 20702 20877 21648 21658 21712 21859 21989 22164 22935 22945 22999 23146 23276 23451 24222 24232 24286 24433 24563 24738 25509 25519 25573 25720}); set hideNotSelected false; } function _setState() { # # initialize; # update caption ppdiaCaptionCmd = "changeCaption('NMR structure of proinsulin, 20 models. Chains B, C, and A are show as green, gray and orange alpha-carbon trace. Disulfide links are sketched in yellow.','white','black');"; javascript @ppdiaCaptionCmd; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setFrameState; _setPerspectiveState; _setSelectionState; set refreshing false; SelectionHalos OFF; delay 1.0; moveto 1.0 { 229 959 -165 174.48} 152.09 0.0 0.0 {-3.5188652173913 -1.6930804347826083 -6.2631076086956385} 39.76143371925721 {0 0 0} 0 0 0 3.0 0.0 0.0;; set refreshing true; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false }; set antialiasTranslucent true; set antialiasImages true; spin on; } _setState;